PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011090064.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 1016aa    MW: 112723 Da    PI: 4.9701
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011090064.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.33.1e-073875147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g WT+eEde+l  av+++ g++Wk+I           qc +rwqk+
   XP_011090064.1 38 KGQWTAEEDEILRIAVQRFKGKNWKKI----D-----VQCLHRWQKV 75
                     799***********************4....3.....6677777776 PP
2Myb_DNA-binding65.11.3e-2082128148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEde+++++v ++G++ W+tIa++++ gR +kqc++rw+++l
   XP_011090064.1  82 KGPWSKEEDEIIIELVSKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 128
                      79******************************.*************97 PP
3Myb_DNA-binding48.22.4e-15134176145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eE++ l++a++ +G++ W+   + ++ gRt++ +k++w+
   XP_011090064.1 134 KEAWTQEEELALIRAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 176
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.4313376IPR017930Myb domain
SMARTSM007170.0163778IPR001005SANT/Myb domain
SuperFamilySSF466895.17E-93986IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.8E-144089IPR009057Homeodomain-like
PROSITE profilePS5129434.16677132IPR017930Myb domain
SuperFamilySSF466891.05E-3179175IPR009057Homeodomain-like
SMARTSM007171.2E-1981130IPR001005SANT/Myb domain
PfamPF002494.7E-1982128IPR001005SANT/Myb domain
CDDcd001673.52E-1784128No hitNo description
Gene3DG3DSA:1.10.10.606.5E-2890135IPR009057Homeodomain-like
PROSITE profilePS5129419.513133183IPR017930Myb domain
SMARTSM007176.3E-15133181IPR001005SANT/Myb domain
PfamPF002492.1E-13134177IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-21136183IPR009057Homeodomain-like
CDDcd001671.17E-11136176No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032875Biological Processregulation of DNA endoreduplication
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 1016 aa     Download sequence    Send to blast
MESDRTSNNT LSDGGRNFLH RARPLHGRTT GPTRRSTKGQ WTAEEDEILR IAVQRFKGKN  60
WKKIDVQCLH RWQKVLNPEL VKGPWSKEED EIIIELVSKY GPKKWSTIAQ HLPGRIGKQC  120
RERWHNHLNP NINKEAWTQE EELALIRAHQ IYGNKWAELT KFLPGRTDNA IKNHWNSSVK  180
KKLDMYLASG LLSQFQGPPL VSRPNHSAAS SSSRAQQSGE DDSVFKGGVE VEEASECSQG  240
STIANFSQPL NNAIAHPRRD CRGTEESGSI PYPEDYCPTF QEATYGIPEV PCELDDKYLE  300
HDFPLDWGTF AGKDWQLNAN ELPDMSLLDL GQESSGLVLP SVSDRNNHEA VPFPQESSIP  360
LGASTSVEKV VGDTNTSNPI ANLDYRMVYP EADLGVCCPS ENVISDIDGL TDSLLHRSSN  420
FQIPEDETFA SQSCYMPPGN SVIQPLPLLP TQLPPADASL MFSMNPHQYS YPSHENAGQE  480
CIPPSTHGRF IYSKESDYSN EAREAPKLVP ANDFVLAPCD DSHCSSEDKD IKFDEQKESG  540
ALFYEPPRFP SLDIPFFSCD LIQSGSDLHQ EYSPLGIRQL MISSMTPFKL WDSPSRDDSP  600
VAVLKSAAKT FTSTPSILKK RQRDLVSPLS EKRFEKKLEG FSKQESFSNL TNDFSRLEVM  660
FDECMEKKGP LLSLSPNKRN SEPSCKEKEN APPPCGQAEN EGNENIIVPE IKISIEEFNS  720
SDSLNKITEQ TAVADVKAKG GGNNVTEKAR EFSGILVEHD MNDLIFFSPD RFGSKNDRAI  780
GPSPRALGNQ YSRRLDALSK NGAILSSSET SCFSVICSPR LCTKKDGTNL VISTSLQSLS  840
PSDKKAESSG TGVASENNSI FVETPFKRSI ESPLAWKSPW FINTFVPGPR IDTDITIEDI  900
GYFLSPGDRS YDAIGLMKQL GEQTAGAFAD AQEVLGDETP ETIMKGQCSV NHEGRKENNN  960
SPNSQAEYHS ALAANFMTER RTLDFSECAT PAKETGKPSN SISFSSPSSY LLKECR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-64381836159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-64381836159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00505DAPTransfer from AT5G11510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011090064.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR7801021e-155KR780102.1 Rehmannia glutinosa 3R MYB protein (MYB26) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090064.10.0transcription factor MYB3R-1 isoform X2
TrEMBLA0A2G9GJ310.0A0A2G9GJ31_9LAMI; Transcription factor, Myb superfamily
STRINGMigut.E01513.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.10.0myb domain protein 3r-4