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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011090023.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | NF-YA | ||||||||
Protein Properties | Length: 365aa MW: 40175.8 Da PI: 7.1244 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 102.7 | 3.3e-32 | 215 | 271 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rak+e ekkl +k+rkpylheSRh+hA+rR+RgsgGrF XP_011090023.1 215 QEPVYVNAKQYHGILRRRQIRAKAELEKKL-IKARKPYLHESRHQHAMRRARGSGGRF 271 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 4.3E-36 | 213 | 274 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.491 | 214 | 274 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 4.9E-28 | 216 | 271 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.3E-24 | 217 | 239 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 219 | 239 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 2.3E-24 | 248 | 271 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MYSFLHVNIP ACNEVSDLWF CSCLVPGFCL LMCLDSIKIG QVLWRNYESM QPKSKTVNQG 60 ETNLYNGHNS TLCSEPWWNS TGFNSFSPAM MRGNASDSSS LEQSADGQSQ SEGGINEDDD 120 ETVKQSPSTM PLQSDRNHRP ENTNLEKGVP TLHPRPDGSL SQPPQLELVG HSIACAANPY 180 DPYFGGVVAA YGQPMVPHLY DMNQMRMPLP LEMAQEPVYV NAKQYHGILR RRQIRAKAEL 240 EKKLIKARKP YLHESRHQHA MRRARGSGGR FAKKSDADTS KGTGSGSDVS SQSINSTGSE 300 PLLSKSSGAK APEPQNLYDS AASNFRKQTN LQEPVYQSHS GEMGEGPASS QQWGNIPSNH 360 ALAMQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 5e-20 | 215 | 289 | 2 | 76 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011090023.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020552351.1 | 0.0 | nuclear transcription factor Y subunit A-1 isoform X1 | ||||
TrEMBL | A5PGU3 | 1e-152 | A5PGU3_ANTMA; YA4 | ||||
STRING | Migut.N02320.1.p | 1e-143 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3111 | 22 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12840.3 | 4e-54 | nuclear factor Y, subunit A1 |