PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_011089966.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

C2H2

Protein Properties

Length: 290aa MW: 31327.9 Da PI: 6.7866

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011089966.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00065	118	140	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H XP_011089966.1 118 YECKTCNRTFPSFQALGGHRASH 140 99**********99999998887 PP
2	zf-C2H2	12	0.00064	193	215	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F + L H+r+H XP_011089966.1 193 HECSICGSEFASGQALGGHMRRH 215 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.37E-6	117	146	No hit	No description
Pfam	PF13912	2.6E-13	117	142	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.052	118	140	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.843	118	145	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	120	140	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.2E-5	190	217	No hit	No description
PROSITE profile	PS50157	9.66	193	220	IPR007087	Zinc finger, C2H2
Pfam	PF13912	4.0E-11	193	216	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.031	193	215	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	195	215	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MMMKMEILEE FAGSNDHAIV KGKRTKRPRP SSSASSSGGG SGGGVVEAHN SLLVSYSPTT 60 SSGISTSMEE DEDMANCLIL LARGGSPPPI KAVEGKFSSR KFAEMATTAA GKVGIYVYEC 120 KTCNRTFPSF QALGGHRASH KKPKPTTDDD QKKSPPAPPP PDYQEEEEAP PPSTQLPNNK 180 SCHYYDHNKP KIHECSICGS EFASGQALGG HMRRHRTAPS TTGTRIGTSV DNDSPTTSHD 240 VSEKPRNTLE FDLNLPAESP EDDKLQDHEF PAKQQPRLVF SAAALVDCHY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	25	29	KRPRP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011089966.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011089966.1	0.0	zinc finger protein ZAT5-like
TrEMBL	A0A2G9GNU5	1e-111	A0A2G9GNU5_9LAMI; Uncharacterized protein
STRING	Migut.N02543.1.p	3e-96	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1262	24	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	6e-46	C2H2 family protein