PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011089918.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ARF
Protein Properties Length: 688aa    MW: 75584 Da    PI: 7.5711
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011089918.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.11.6e-23112213199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +ae++         ++ +   ++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   + +
  XP_011089918.1 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--NVIAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RAE 202
                     89****************************998666666..699**********************************************..448 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++ l+v+++r+
  XP_011089918.1 203 NGDLCVGIRRA 213
                     8999****997 PP
2Auxin_resp116.32.6e-38271353283
      Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     a  a+++++FevvY+Prast+eF+vk+++v++a++++++ GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
  XP_011089918.1 271 AFLAANSQPFEVVYYPRASTPEFCVKASSVSAAMRIQWCSGMRFKMAFETEDSSRISWfMGTIAAVQVADPIRWPNSPWRLLQ 353
                     567899***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-37103215IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.62E-29105213IPR015300DNA-binding pseudobarrel domain
CDDcd100171.58E-21111212No hitNo description
SMARTSM010195.6E-22112214IPR003340B3 DNA binding domain
PROSITE profilePS5086313.098112214IPR003340B3 DNA binding domain
PfamPF023621.2E-21112213IPR003340B3 DNA binding domain
PfamPF065075.8E-33271353IPR010525Auxin response factor
PROSITE profilePS5174519.043576656IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MKEVAEKSLD SELWHACAGG MVQMPPVNSK VFYFPQGHAE HTLTSVDFGT LPRIPPLILC  60
RVASVKFLAD PETDEVYTKI GMIPVGKNEH GFDDDRVLGS NRSESSEKPT SFAKTLTQSD  120
ANNGGGFSVP RYCAETIFPR LDYTADPPVQ NVIAKDVHGE TWKFRHIYRG TPRRHLLTTG  180
WSTFVNQKKL VAGDSIVFLR AENGDLCVGI RRAKKGGGIG ANESSSVWNS GCAGGFSAFL  240
EDENKLMHRS FGNGNLRDRG RVRPESVVEA AFLAANSQPF EVVYYPRAST PEFCVKASSV  300
SAAMRIQWCS GMRFKMAFET EDSSRISWFM GTIAAVQVAD PIRWPNSPWR LLQVTWDEPD  360
LLQNVKCVNP WLVEMVSNMP VLHLSPFSPP RKKLRLPHHT DFPLDGQFPM PSFSGNPLGP  420
SSPLCCLSDN ITVGIQGARH AQIGVPFSDL HFSNKLQMGL LPASFLRLDP HAKVVDGTAR  480
GNMDGNENIS CLLSMGNSSQ KSEKTDGAKT PLFVLFGQPI LTEQQMSVDQ SLALGRSSSG  540
GTPSKIESSA PAPKSLSTAQ FFWKQSHHAT ELTLDTGHCK VFLESEDVGR TLDLSVLGSY  600
EELYKKLEHM FGIERLEMLS HLSYCDATGA VKQAGEEPFS EFMKSAKRLT ILMKPSSNNA  660
ERKLITGLPT AERGLNSSKQ AGPMSIFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-80937451388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011089918.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089918.10.0auxin response factor 18-like
RefseqXP_020552218.10.0auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A191T8S30.0A0A191T8S3_SALMI; Auxin response factor
STRINGXP_009797612.10.0(Nicotiana sylvestris)
STRINGXP_010253698.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]