PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011089888.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 492aa    MW: 54198.3 Da    PI: 9.1662
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011089888.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-056991123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  XP_011089888.1 69 FVCEICNKGFQRDQNLQLHRRGH 91
                    89*******************88 PP
2zf-C2H211.90.00069146168123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+ k H + +
  XP_011089888.1 146 WKCEKCSKKYAVQSDWKAHSKIC 168
                     58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.96E-76891No hitNo description
Gene3DG3DSA:3.30.160.601.6E-56891IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121717.8E-56991IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9496991IPR007087Zinc finger, C2H2
SMARTSM003550.0176991IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
SMARTSM0035579111141IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.2E-5134167IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.96E-7141166No hitNo description
SMARTSM00355140146166IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MMSAGDGLPS VHPAASMRGF VQAPNPNPST NPNPNSNPSK RKRNLPGTPD PDAEVIALSP  60
KSLMATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR TNKEVVRKKV YICPEKTCVH  120
HDPSRALGDL TGIKKHYSRK HGEKKWKCEK CSKKYAVQSD WKAHSKICGT REYKCDCGTI  180
FSRKDSFITH RAFCDALAQE NAGLTTPFPS ANLNVRSHDE LMSGGPNNLQ NAGSSRFSGV  240
FRTEIRGFES ENQLNLDLQK SRLPMWLDHA NSHHLNPIGN PSCSSNASFL VSSTPASCLP  300
AELVQMASSQ TQWLSRGQQE SLAGGNNINA SSSSAWPGSV PREEEENKGN LSEAISSLYY  360
SNNQSQHATN PPPAPMSATA LLQKAAQIGS TRSTSSAIFA TGFGLMSSPL PSLGSFSSFN  420
QTRNEIHRNL GKGENDNNLS GFMASKSEAE NSLTRDFLGM GENENENENQ SRRFLQENFD  480
QFASMGHYSR NH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-35142206367Zinc finger protein JACKDAW
5b3h_F8e-35142206367Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195108KLKQRTNKEVVRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that, together with JKD, regulates tissue boundaries and asymmetric cell division in roots by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:25829440). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011089888.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089888.10.0protein indeterminate-domain 9
SwissprotQ944L31e-115IDD9_ARATH; Zinc finger protein BALDIBIS
TrEMBLA0A2Z7BLI80.0A0A2Z7BLI8_9LAMI; Zinc finger protein JACKDAW-like
STRINGVIT_06s0004g03070.t011e-174(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-101C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]