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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
XP_011089852.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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| Family |
AP2 |
| Protein Properties |
Length: 490aa MW: 54117.8 Da PI: 7.6731 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_011089852.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 54.6 | 2.8e-17 | 159 | 208 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g
XP_011089852.1 159 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTALAAARAYDRAAIKFRG 208
78*******************......55************************997 PP
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| 2 | AP2 | 41.2 | 4e-13 | 251 | 301 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV+ +k grW+A+ + +k+ +lg f+t+ eAa+a+++a+ k +g
XP_011089852.1 251 SKYRGVTLHK-CGRWEARMGQF--L-GKKYMYLGLFDTEVEAARAYDKAAIKCNG 301
89********.7******5553..2.26**********99**********99776 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 490 aa
Download sequence Send
to blast |
MFDLNLSVDC NGKAMLKTDH SEGQSPETSL SSVVNGTGET SSSNDDTCST RAASPIHGGG 60
DSAAFTFNFD ILANTSNSGN DDPVDKGDSG LTLAESRLVT RELFPVSRLG ELNLGRQITE 120
PANLRFDHGL PTTAVQQQKQ EVQQVQARKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC 180
GKQVYLGGFD TALAAARAYD RAAIKFRGVD ADINFNLSDY EEDMKQTKNL TKEEFVHILR 240
RQSTGFSRGS SKYRGVTLHK CGRWEARMGQ FLGKKYMYLG LFDTEVEAAR AYDKAAIKCN 300
GRDAVTNFEP STYDGEMIPK PGNEAGSRDD LDLNLGMSTS SPKESENLGS FQFPPYNVQN 360
SRMLKLHMQN SGNPPLNGPP VALEHPRLLT GVNDKFVPNY EERTSQQRTG LVSGQEVGNW 420
AWQMHDRARA IPNATLSTAA SSGFSSTATN SDSSYQTTAL NLRFLSSYPH ASINASQYYS 480
HHITPSFPHP
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
| Publications
? help Back to Top |
- Lee DY,An G
Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
Plant J., 2012. 69(3): p. 445-61
[PMID:22003982] - Wang L, et al.
Coordinated regulation of vegetative and reproductive branching in rice.
Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
[PMID:26631749] - Dai Z,Wang J,Zhu M,Miao X,Shi Z
OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
Front Plant Sci, 2016. 7: p. 1891
[PMID:28066457]
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