PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011089355.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | LBD | ||||||||
Protein Properties | Length: 195aa MW: 21648.3 Da PI: 4.9475 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.5 | 2e-42 | 31 | 131 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C+++Cvlapyfp ++p kf +h++FGasn++kll++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+++la XP_011089355.1 31 PCAACKILRRRCVEKCVLAPYFPPTDPLKFTTAHRVFGASNIIKLLQELPEAQRADAVSSMVYEANARLRDPVYGCAGAICQLQNQVNELQQQLA 125 7********************************************************************************************** PP DUF260 96 llkeel 101 ++++++ XP_011089355.1 126 KAQAQI 131 **9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.238 | 30 | 131 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-42 | 31 | 128 | IPR004883 | Lateral organ boundaries, LOB |
SuperFamily | SSF101082 | 8.89E-5 | 107 | 176 | IPR023220 | Type IV secretion system, VirB5-domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MNMEGNEVAR VSSTQTQSST SSSSAAVVMS PCAACKILRR RCVEKCVLAP YFPPTDPLKF 60 TTAHRVFGAS NIIKLLQELP EAQRADAVSS MVYEANARLR DPVYGCAGAI CQLQNQVNEL 120 QQQLAKAQAQ IANMQTQNAH LMALICDEMA QSSQTLPQHD QQSFDDFNSS PHSYQSNTSF 180 LEENNFELLW EPLWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-43 | 30 | 157 | 10 | 127 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-43 | 30 | 157 | 10 | 127 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011089355.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011089355.1 | 1e-144 | LOB domain-containing protein 1 | ||||
Swissprot | Q9SK08 | 4e-71 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | A0A2G9GMD1 | 1e-106 | A0A2G9GMD1_9LAMI; Uncharacterized protein | ||||
STRING | EOY33105 | 3e-89 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 2e-56 | LOB domain-containing protein 11 |