PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011089294.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HD-ZIP
Protein Properties Length: 838aa    MW: 91785.6 Da    PI: 6.3935
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011089294.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.8e-182582457
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_011089294.1 25 YVRYTAEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 82
                    5789****************************************************97 PP
2START154.58.8e-491633702204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g+ ++ +f+ s+++sg a+ra+g+v  ++    +e+l+d+  W +++++ e+      g  g+++l 
  XP_011089294.1 163 IAEETLAEFLSKATGTAVDWVQMPGMKPGPGSVGIFAISQSCSGVAARACGLVSLEPS-KIAEILKDRSSWFRDCRSLEVFTMFPAGngGTIELL 256
                     7899******************************************************.6667777776***********999999999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++++a+++l+p Rdf+++Ry+ +l+ g++v++++S++ +   p+     ++vRae+lpSg+li+p ++g+s +++v+h +l++++++++lr+l+
  XP_011089294.1 257 YTQTYAPTTLAPaRDFWTLRYTTTLENGSLVVCERSLSGTGAGPKaaaALQFVRAEMLPSGYLIRPYEGGGSIIHIVDHLNLEAWSVPEVLRPLY 351
                     ********************************************999999********************************************* PP

                     HHHHHHHHHHHHHHTXXXX CS
           START 186 ksglaegaktwvatlqrqc 204
                     +s+ + ++kt+ a+l++ +
  XP_011089294.1 352 ESSKVVAQKTTIAALKYIR 370
                     ***************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.1431983IPR001356Homeobox domain
SMARTSM003895.5E-152187IPR001356Homeobox domain
SuperFamilySSF466893.08E-162385IPR009057Homeodomain-like
CDDcd000864.75E-162484No hitNo description
PfamPF000467.5E-162582IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-182682IPR009057Homeodomain-like
CDDcd146865.84E-676115No hitNo description
PROSITE profilePS5084826.735153381IPR002913START domain
CDDcd088751.33E-67157373No hitNo description
SMARTSM002346.4E-39162372IPR002913START domain
Gene3DG3DSA:3.30.530.202.8E-18162348IPR023393START-like domain
SuperFamilySSF559611.15E-32162374No hitNo description
PfamPF018522.0E-46163370IPR002913START domain
PfamPF086703.8E-50694837IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MAMVVQQHRE SSSGSISKHL DAGKYVRYTA EQVEALERVY AECPKPSSLR RQQLIRECPI  60
LSNIEPKQIK VWFQNRRCRE KQRKESTRLQ SVNRKLTAMN KLLMEENDRL QKQVSQLVCE  120
NGYMRQQLHT AAAPTNDASC ESAVTTPQHS LRDANNPAGL LSIAEETLAE FLSKATGTAV  180
DWVQMPGMKP GPGSVGIFAI SQSCSGVAAR ACGLVSLEPS KIAEILKDRS SWFRDCRSLE  240
VFTMFPAGNG GTIELLYTQT YAPTTLAPAR DFWTLRYTTT LENGSLVVCE RSLSGTGAGP  300
KAAAALQFVR AEMLPSGYLI RPYEGGGSII HIVDHLNLEA WSVPEVLRPL YESSKVVAQK  360
TTIAALKYIR QIAQETSGEV VYGLGRQPAV LRTFSQRLSR GFNDAINGFN DDGWSILNCD  420
GAEDVVVAIN SAKSVTASSD TLSVLGGVLC AKASMLIQNV PPAVLVRFLR EHRSEWADFN  480
VDAYAAAALK NTYAYPGMRP TRFTGSQIIM PLGHTIEHEE MLEVIRLEGH SLSHEDAFMS  540
RDIHLLQMCS GIDENAVGAC SELIFAPIDE MFPDDAQLLP SGFRLIPLDS KPGDFQDSLT  600
SHKTLDLTSS LEVGPATSNN GKNAAASCSA RSILTIAFQF PFENNLQENV ATMARQYVRS  660
VISSVQRVAM AISPSGLSPT VGSKLSPASP EALTLAHWIC QSYSYHTGAE LLRSDASSSE  720
AVLKTLWHHQ DAVLCCSLKD VPVFTFANQA GLDMLETTLV ALQDITLEKI FDDAGHKALF  780
SEFAKIMQQG FTHLPGGICM STMGRHVSYE QAIVWKVFAG EETTVHCLAF SFVNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011089294.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089294.10.0homeobox-leucine zipper protein REVOLUTA
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A2G9HC040.0A0A2G9HC04_9LAMI; Uncharacterized protein
STRINGVIT_06s0004g02800.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]