PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011089287.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ARF
Protein Properties Length: 712aa    MW: 78085.3 Da    PI: 7.8874
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011089287.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3741.7e-23112213199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +ae++         ++ +   ++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   + +
  XP_011089287.1 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--NVIAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RAE 202
                     89****************************998666666..699**********************************************..448 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++ l+v+++r+
  XP_011089287.1 203 NGDLCVGIRRA 213
                     8999****997 PP
2Auxin_resp115.83.7e-38277357483
      Auxin_resp   4 aastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+++++FevvY+Prast+eF+vk+++v +a+++++++GmRfkm fetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
  XP_011089287.1 277 LAANGQPFEVVYYPRASTPEFCVKASSVTAAMRIQWCPGMRFKMPFETEDSSRISWfMGTIASVQVADPLRWPNSPWRLLQ 357
                     6899***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.5E-38103217IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-29105218IPR015300DNA-binding pseudobarrel domain
CDDcd100171.22E-21111212No hitNo description
PfamPF023621.3E-21112213IPR003340B3 DNA binding domain
SMARTSM010195.6E-22112214IPR003340B3 DNA binding domain
PROSITE profilePS5086313.098112214IPR003340B3 DNA binding domain
PfamPF065077.5E-33277357IPR010525Auxin response factor
PROSITE profilePS5174516.897600680IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    Send to blast
MKEVMEKSLD SELWHACAGG MVQMPPVNSK VFYFPQGHAE HTLTTVDFGA LPKIPPLILC  60
RVAAVKYLAD PETDEVYAKI RLIPVGKNES GFDDDGVLGG SGSASNEKPT SFAKTLTQSD  120
ANNGGGFSVP RYCAETIFPR LDYTADPPVQ NVIAKDVHGE TWKFRHIYRG TPRRHLLTTG  180
WSTFVNQKKL VAGDSIVFLR AENGDLCVGI RRAKRGSGIG GSEPSSGWNS GAAGNFAGFS  240
SFLKEDENKL MHRSVTNGSL REKGKVRPES VLEATFLAAN GQPFEVVYYP RASTPEFCVK  300
ASSVTAAMRI QWCPGMRFKM PFETEDSSRI SWFMGTIASV QVADPLRWPN SPWRLLQVTW  360
DEPDLLQNVK CVSPWLVEMV SNMPVLHLSP FSPPRKKLRL PHHPDFPLDG QLPMPSFSGT  420
PLGPSGPLCC LSDNITAGIQ GARHAQIGVP LSDLHLSNKL QMGLLPPSFL RLNPHAKIPE  480
NKARSNVDGN EHISCLLSLE ISGHKSEKSD GLKTPRFVLF GQPILTEQQM SNDHSCDAVX  540
XXXXXXDAVP KLAHGKSCSG GTPRRIANFA PDSGELPKSS STAQFLWKPG YHASDLGLDT  600
GHCKVFLESE DVGRTLDLSI LGSYEELYKR LEHMFGIEKL EMLSHVFYRD VTGAVKQAGA  660
EPFSEFMKNA KRLTILMKPS NNNSERKLIT GLPTAERGLD SSNQAGPLSI FA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-83937851388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011089287.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089287.10.0auxin response factor 18 isoform X1
RefseqXP_020552360.10.0auxin response factor 18 isoform X1
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A191T8S30.0A0A191T8S3_SALMI; Auxin response factor
STRINGXP_009797612.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]