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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011089037.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | bHLH | ||||||||
Protein Properties | Length: 538aa MW: 58014.6 Da PI: 6.6536 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.1 | 3.6e-09 | 363 | 410 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_011089037.1 363 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 410 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 32 | No hit | No description |
CDD | cd00083 | 1.28E-10 | 357 | 414 | No hit | No description |
SuperFamily | SSF47459 | 9.42E-17 | 357 | 426 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-16 | 359 | 423 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.663 | 359 | 409 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.0E-6 | 363 | 410 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-10 | 365 | 415 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 538 aa Download sequence Send to blast |
MDKDYFMNAG IPPPQPLQFE TTLPVPWSGL SCPPEHSFLD PNSSMDHHYS SFESALSSMV 60 SSSPAAATTT SGLSNEAFVL RELIGKLSGA GSSTSFPPPA TTTTTTSSPF NDSSYRTPLN 120 SPKLQLPFLD QMNMPNLATS LPPAPPPLPA LSADPGFAER AAKFSCFGSR SFNGRTSPFG 180 VNNAELGHRS NTTLMGNGKL PRVSSSPALK QGGSPVENKN SGQHGMEIKL VNGFVSGSEK 240 KLSKLSGSGA SSNEESSVSE QIPSGENGPK TSNEMSSRKR KAVSRAKSKE NGSNSAKGGE 300 GDDDGNAKRS KPTEIGKNET KMEEEGKGGS NDESEKQKAN QKPPEPPKDY IHVRARRGQA 360 TDSHSLAERV RREKISERMK LLQDLVPGCN KVTGKALMLD EIINYVQSLQ RQVEFLSMKL 420 ASVNPGLDFN MDNLLSKDQM FQPQQMYPLD SSAPTLYHHQ PQQNVQQFHD TTNASTGGPL 480 SQCPVDPLPL GVQLPCTDGF SESLPQFPAF SEDDLHSIVH MGFVNFPVNQ ASDTRVER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011089037.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ054725 | 1e-59 | KJ054725.1 Sesamum indicum clone TilSSR_25926 microsatellite Sesame_25926 sequence. | |||
GenBank | KJ063766 | 1e-59 | KJ063766.1 Sesamum indicum clone TilSSR_34967 microsatellite Sesame_34967 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011089037.1 | 0.0 | transcription factor bHLH62 isoform X1 | ||||
TrEMBL | A0A2G9GX75 | 0.0 | A0A2G9GX75_9LAMI; Uncharacterized protein | ||||
STRING | EMJ02381 | 1e-156 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1057 | 23 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 8e-84 | bHLH family protein |