PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011088968.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 385aa    MW: 42387.9 Da    PI: 5.8562
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011088968.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.3e-153784148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l ++    G g+W+ Iar  g+ R++k+c++rw +yl
   XP_011088968.1 37 KGLWSPEEDEKLMNYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYL 84
                     678*******************************************97 PP
2Myb_DNA-binding51.72.1e-1690133146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+el+++++  lG++ W+ Ia++++ gRt++++k++w++
   XP_011088968.1  90 RGAFSPQEEELIIHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 133
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.1473284IPR017930Myb domain
SuperFamilySSF466891.64E-2835131IPR009057Homeodomain-like
SMARTSM007173.9E-113686IPR001005SANT/Myb domain
PfamPF002498.9E-143784IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-233891IPR009057Homeodomain-like
CDDcd001672.80E-94084No hitNo description
PROSITE profilePS5129425.69985139IPR017930Myb domain
SMARTSM007175.3E-1689137IPR001005SANT/Myb domain
PfamPF002495.0E-1590133IPR001005SANT/Myb domain
CDDcd001674.29E-1192132No hitNo description
Gene3DG3DSA:1.10.10.607.6E-2692140IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MRKPAAAADH NNNNTMIMVK EKVNTNSVIH NKGKLRKGLW SPEEDEKLMN YMLTNGQGCW  60
SDIARNAGLQ RCGKSCRLRW INYLRPDLKR GAFSPQEEEL IIHLHSILGN RWSQIAARLP  120
GRTDNEIKNF WNSTIKKRLK NNSNNNNSES SPNNSNSDSM SELIKATGTT AGGSLNYMGA  180
AGTIFMQEYE VAAICMDSSS SSCSSMQPPS NLGSTQFTNP FNNTTTHHHH HHDQSNIFID  240
ANSVFNLSAC LQQGGGGGGV GVGGVGGFGD YDHHDAAGVM ELPYDHMMGL ESELSVPGLE  300
HNNISSYNNG VNLDKNNKQV NQYYNLMNDQ CSTKVEELVE VGFGVGIGND DNWEGSESFK  360
MGELDWEGLL ANVSSLPNYL DFQLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27351395108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011088968.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088968.10.0transcription factor MYB26
TrEMBLA0A2G9I1W91e-125A0A2G9I1W9_9LAMI; Transcription factor, Myb superfamily
STRINGXP_009612035.16e-97(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.14e-71myb domain protein 46