PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011088945.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 376aa    MW: 43353.5 Da    PI: 8.8826
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011088945.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012138161123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     + C  Cg++F +++ L +H +  H
  XP_011088945.1 138 HICRVCGRRFYTNEKLINHFKQiH 161
                     68*****************88766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10102.6E-85794IPR029060PIN domain-like
PROSITE profilePS5015711.136138166IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.40.50.10102.6E-8140162IPR029060PIN domain-like
PROSITE patternPS000280140161IPR007087Zinc finger, C2H2
CDDcd061674.50E-14155297No hitNo description
PfamPF019362.4E-7210290IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10102.6E-8213278IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MVNLAKFQRS SSTIQLFQLI QTLYPTLPIS GCSHFTSMSN QNPDSSISLS SSEQRVAEHH  60
VAIFWDLDNK PPKSFPPYDA AMRLKKAAQK FGFVKYMIAY ANRHAFSYVP PSIRAQRRER  120
KTWNELETKG VVKPDEPHIC RVCGRRFYTN EKLINHFKQI HEREQIKRLN QIESARGKRR  180
VQMVGRYAMK MEKYRNAARD ILTPKVGYGL ADELKRAGFW VRTVSNKPQA ADVALRNQMV  240
DMMDRRLVEC LFLVSDDSDF VEILKEARLR CLKTVVVGDI SDGILKRTAD AAFSWQEIMM  300
GQAKKEAVSV VGRWKDQSVL QRLEWTYDPE TEKKLYYYEI ESEDSDIDCI SSGEYGSLLD  360
AENDDAWPLL STDPPT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011088945.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088941.10.0uncharacterized protein LOC105170049 isoform X1
TrEMBLA0A2G9GCA30.0A0A2G9GCA3_9LAMI; Uncharacterized protein
STRINGMigut.D02420.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-139C2H2 family protein