PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011088915.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | NAC | ||||||||
Protein Properties | Length: 240aa MW: 27519.2 Da PI: 8.2084 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 137.7 | 7.3e-43 | 6 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 l+pG+rF Pt+eelv++yL++ +++++ +++ +vi+ +diy+++P++Lpk +++++++w+fF++r+ ++ +g r++r+t+sgyWkatg+ XP_011088915.1 6 LQPGVRFYPTEEELVSFYLHNMLQHNNnNKIRRVIPLLDIYQLHPSQLPKhcgeLCRGDTEQWFFFVPRQAREVRGGRPSRTTASGYWKATGSPS 100 579********************99985677788***************645643444777********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s++++++g+kk++vfy+g+ap g kt+W m+eyr+ XP_011088915.1 101 YVYSSDNKVIGVKKSMVFYQGKAPAGAKTKWKMNEYRA 138 ************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.5E-46 | 5 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.515 | 6 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-22 | 8 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MASEILQPGV RFYPTEEELV SFYLHNMLQH NNNNKIRRVI PLLDIYQLHP SQLPKHCGEL 60 CRGDTEQWFF FVPRQAREVR GGRPSRTTAS GYWKATGSPS YVYSSDNKVI GVKKSMVFYQ 120 GKAPAGAKTK WKMNEYRAIK EDFCTSIPVL RHEVSLCRVY VVSGSFRAFD RRPTHVAANS 180 ISKEVKIVQE NDKITLSTNE IAGMLQERSW YSYSEANHSV ENSSEMINGV EHLMECDEDV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-29 | 6 | 160 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-29 | 6 | 160 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-29 | 6 | 160 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-29 | 6 | 160 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-29 | 6 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swm_B | 3e-29 | 6 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swm_C | 3e-29 | 6 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swm_D | 3e-29 | 6 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swp_A | 3e-29 | 6 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swp_B | 3e-29 | 6 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swp_C | 3e-29 | 6 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swp_D | 3e-29 | 6 | 160 | 20 | 166 | NAC domain-containing protein 19 |
4dul_A | 3e-29 | 6 | 160 | 17 | 163 | NAC domain-containing protein 19 |
4dul_B | 3e-29 | 6 | 160 | 17 | 163 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011088915.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088915.1 | 0.0 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 3e-82 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A2G9HT77 | 1e-109 | A0A2G9HT77_9LAMI; Uncharacterized protein | ||||
STRING | Migut.N02478.1.p | 3e-94 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2494 | 23 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 1e-84 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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