PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011088886.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bZIP

Protein Properties

Length: 438aa MW: 48771 Da PI: 9.615

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011088886.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.9	1.4e-10	133	170	4	41
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41 k rr+++NReAAr+sR+RKka++++Le L++ XP_011088886.1 133 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLTQL 170 6889*************************866555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.0E-6	128	195	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.7E-8	132	176	No hit	No description
PROSITE profile	PS50217	9.163	132	176	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.3E-7	133	174	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.84E-7	134	177	No hit	No description
PROSITE pattern	PS00036	0	137	152	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	7.6E-33	215	290	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MISTDSITAK EKEKTYKGRL ALYTTVRPAA TLEMFPSWPM RFQQHTPRGS SKSGEESTDS 60 GSAVNTLSTT RLEPDSPISR KTSSDHRLPP PQMDTGSGVD SPRTGGSQTQ PAAKQAPEKR 120 RGPGSNSEKV LDAKTLRRLA QNREAARKSR LRKKAYVQQL ESSRIRLTQL EQDLQRARSQ 180 GLFLGGGGVA GGNISSGGAI FDMEYARWLE DDHRHMSELR TALQAHLSDG DLRVIVDGYI 240 AHYDEIFRLK GVAAKSDVFH LITGMWTTPA ERCFLWMGGF RPSDLIKMLI TQLDPLTEQQ 300 VMGIYGLQQS SQQAEEALSQ GLEQLQQSLI DTIANGSIND SMHHMAVALG KLSNLEGFVR 360 QADNLRQQTL HQLRRILTVR QAARCFLVIG EYYGRLRALS SLWASRPRET LIVDDSSCQT 420 TTTDLQMVQS SQNQFSNF

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MISTDSITAK EKEKTYKGRL ALYTTVRPAA TLEMFPSWPM RFQQHTPRGS SKSGEESTDS  60
GSAVNTLSTT RLEPDSPISR KTSSDHRLPP PQMDTGSGVD SPRTGGSQTQ PAAKQAPEKR  120
RGPGSNSEKV LDAKTLRRLA QNREAARKSR LRKKAYVQQL ESSRIRLTQL EQDLQRARSQ  180
GLFLGGGGVA GGNISSGGAI FDMEYARWLE DDHRHMSELR TALQAHLSDG DLRVIVDGYI  240
AHYDEIFRLK GVAAKSDVFH LITGMWTTPA ERCFLWMGGF RPSDLIKMLI TQLDPLTEQQ  300
VMGIYGLQQS SQQAEEALSQ GLEQLQQSLI DTIANGSIND SMHHMAVALG KLSNLEGFVR  360
QADNLRQQTL HQLRRILTVR QAARCFLVIG EYYGRLRALS SLWASRPRET LIVDDSSCQT  420
TTTDLQMVQS SQNQFSNF

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011088886.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020552198.1	0.0	transcription factor TGA9 isoform X1
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A2G9I6Q3	0.0	A0A2G9I6Q3_9LAMI; Transcriptional activator of the JUN family
STRING	Gorai.006G111800.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-167	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]