PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011088799.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 309aa    MW: 33305.7 Da    PI: 6.5067
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011088799.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00069206228123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F +   L  H+r+H
  XP_011088799.1 206 HECSICGSEFASGQALGGHMRRH 228
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.9E-12120145IPR007087Zinc finger, C2H2
SuperFamilySSF576671.17E-7120143No hitNo description
SMARTSM003550.26121143IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.863121148IPR007087Zinc finger, C2H2
PROSITE patternPS000280123143IPR007087Zinc finger, C2H2
SuperFamilySSF576671.17E-7201228No hitNo description
SMARTSM003550.031206228IPR015880Zinc finger, C2H2-like
PfamPF139123.4E-11206230IPR007087Zinc finger, C2H2
PROSITE profilePS501579.598206228IPR007087Zinc finger, C2H2
PROSITE patternPS000280208228IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MMDMEILEDF SGSNDQTIVK GKRTKRLRQS SSASSSGGGC VGGGGEFRGH SLVSSPTTSS  60
GVSTTTEEDE DMANCLILLA QGGGFSSQSE EEIKEVENKF SSRKLTEMTT TTAGKVGIYV  120
YECKTCSRAF PSFQALGGHR ASHKKPKPTT DIDQKNSPPD DQQHEVEEGE SSKLHTVPPP  180
PPPPPSTQSP NKNFHVDHQI NKPKIHECSI CGSEFASGQA LGGHMRRHRP VAMATNSTTT  240
TTTTATRSAN DSSSNDVIGE KTRNVLALDL NLPAPAEDER RDANFHQFSS NQQPRLVFSA  300
AAPLVDCHY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011088799.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0749515e-60KJ074951.1 Sesamum indicum clone TilSSR_46152 microsatellite Sesame_46152 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088799.10.0zinc finger protein ZAT5
TrEMBLA0A2G9GGH41e-118A0A2G9GGH4_9LAMI; Uncharacterized protein
STRINGMigut.N02543.1.p2e-92(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.12e-48C2H2 family protein