 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_011088547.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 308aa MW: 34798.3 Da PI: 10.2673 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_011088547.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 327.4 | 4.1e-100 | 1 | 308 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye...........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkl 81
md++g+re r++ yy+ +++ + +++ ++ + erda+i+er+ al+ekk a++erd+a +qrd+a+a+r++al erdn++
XP_011088547.1 1 MDENGQREsrRHRVdYYKvppwnmisqyqTKEQNAYHVNAKISMLCDERDAAIQERDRALAEKKVALNERDVAIQQRDAAIADRDNALRERDNAI 95
9999999998888899*9******99885225666789999988888************************************************ PP
GAGA_bind 82 lalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskk 176
+al+++e +++ +l+++ + l+ t++ + q + +sa +l e+ +++alpi+ +++a++++++k +++ +++k+k +k+k+k+e+ ++
XP_011088547.1 96 AALQFHESTMNAVLGNNARGLKRTNHPRNQQA----NNVKSARNLGERCITNALPISAIPSDAEKEERTKVNKNITSKKTKSPRKVKRKGEDLNR 186
*********99999888888888877775554....445566778899999***************************************99999 PP
GAGA_bind 177 kvkkesaderskaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLe 270
+ ++e+ skae++ +++ ++ +s++est+PvP+CsCtGa+rqCYkWGnGGWqS+CCtt+iSvyPLP+ +++r+aR++grKmS+++f++lL
XP_011088547.1 187 NITTEG----SKAEWEAQEFgSISPISFNESTMPVPICSCTGAPRQCYKWGNGGWQSSCCTTSISVYPLPQIPNKRHARMGGRKMSGSVFSRLLT 277
999988....89********88************************************************************************* PP
GAGA_bind 271 kLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
++a+ G+dls p+DLk++WAkHGtn+++ti+
XP_011088547.1 278 RMASAGHDLSIPIDLKNYWAKHGTNRYITIK 308
******************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 308 aa
Download sequence Send
to blast |
MDENGQRESR RHRVDYYKVP PWNMISQYQT KEQNAYHVNA KISMLCDERD AAIQERDRAL 60
AEKKVALNER DVAIQQRDAA IADRDNALRE RDNAIAALQF HESTMNAVLG NNARGLKRTN 120
HPRNQQANNV KSARNLGERC ITNALPISAI PSDAEKEERT KVNKNITSKK TKSPRKVKRK 180
GEDLNRNITT EGSKAEWEAQ EFGSISPISF NESTMPVPIC SCTGAPRQCY KWGNGGWQSS 240
CCTTSISVYP LPQIPNKRHA RMGGRKMSGS VFSRLLTRMA SAGHDLSIPI DLKNYWAKHG 300
TNRYITIK
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
