PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011088278.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family B3
Protein Properties Length: 301aa    MW: 34259.5 Da    PI: 10.3171
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011088278.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.39.9e-17108197198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k ++ps+v    +l lpkkf++ h  +   ++ ++l de+g++++  +  ++++    l++GW++F  +++L  gD+++F+l+g  +  l+v+
  XP_011088278.1 108 FVKCMLPSNVAHGFWLHLPKKFCSVHLPN--HDTSIVLVDEWGNEYKTSYLLERHG----LSAGWRGFSISHRLLKGDILIFHLTGPCK--LKVH 194
                     89*********************988533..4568***************777776....***********************988444..5888 PP

                     EE- CS
              B3  96 vfr 98 
                     ++r
  XP_011088278.1 195 IVR 197
                     877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-20102198IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-23102199IPR015300DNA-binding pseudobarrel domain
CDDcd100173.63E-24106197No hitNo description
SMARTSM010193.9E-18108199IPR003340B3 DNA binding domain
PfamPF023624.9E-14108197IPR003340B3 DNA binding domain
PROSITE profilePS5086312.28108199IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
METKKLKGKL HEVETRNCTA SEYSSDHTDK KKKKRMQLQR KKKGVSRKPK SLKSKDKKVC  60
ADNTNKSGSI ARKRTRYTDL YDDVEAKFSV MERAEKVLAR LENELPHFVK CMLPSNVAHG  120
FWLHLPKKFC SVHLPNHDTS IVLVDEWGNE YKTSYLLERH GLSAGWRGFS ISHRLLKGDI  180
LIFHLTGPCK LKVHIVRVND SDVVGAALCL MDMDASRRGT NAESMKRDNK KRKKTKYVEP  240
FLLDISTPLE NKGKNAPSSI PAPVADRSAS SEITNQPQSK DLCYPKTSFL HDHSREGVIC  300
R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12941KKKKKRMQLQRKK
2229233KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011088278.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088278.10.0B3 domain-containing protein At5g42700 isoform X2
TrEMBLA0A2G9HCQ11e-133A0A2G9HCQ1_9LAMI; Uncharacterized protein
STRINGXP_009612758.11e-105(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-35B3 family protein