PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011088239.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 298aa    MW: 32801.1 Da    PI: 6.1854
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011088239.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.4e-1390133855
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      Er RR+++++ f++L  llP++      K +K++i+ +Av+YIk+Lq
  XP_011088239.1  90 TERERRKKMRNMFANLHALLPHL----PAKADKSTIVDEAVNYIKKLQ 133
                     7*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-1680143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.90382132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.77E-1387137No hitNo description
Gene3DG3DSA:4.10.280.106.0E-1587143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.9E-1090138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-1090133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048737.31E-4222279No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MLAMADELGH ELWDDKTWEF PTFGAEEDCG GKLAADVSNS KGQAEEARPA AGAAKGKKRS  60
SAAIGTGDDQ GDEGRGGGGE SDDHELHIWT ERERRKKMRN MFANLHALLP HLPAKADKST  120
IVDEAVNYIK KLQETLQALE KEKIDRLNGL ITNNPIIYDP SIITQQRLAI QSREAFLAEQ  180
GSVALGNPNP HPMFSGPEFP SIFKTWTSPN VILNVCGRDA HINVCSIKKP GLLTAICFVM  240
EKHKLELVSA HVSSDRNRSM YMIHARQGNG GSEQLSQAFP VEEIYKQAAA EIMLWVNS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011088239.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088239.10.0transcription factor bHLH95-like isoform X1
TrEMBLA0A2G9GTZ41e-148A0A2G9GTZ4_9LAMI; Uncharacterized protein
STRINGVIT_03s0063g00170.t011e-101(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13242369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.13e-38bHLH family protein