PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011088152.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 235aa MW: 25538.2 Da PI: 8.237 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.6 | 1e-20 | 16 | 63 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 r + +sn vtfskRr g++KKA+EL++LC+ae+a+++fs+ k++ + XP_011088152.1 16 RMSKESNLLVTFSKRRSGLFKKASELCILCGAEIAIVVFSPGKKVFSF 63 567889999********************************9999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.6E-28 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.338 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.19E-34 | 8 | 79 | No hit | No description |
SuperFamily | SSF55455 | 5.62E-26 | 8 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-17 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-22 | 17 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-17 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-17 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009960 | Biological Process | endosperm development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MARKSSRGRQ KIEMTRMSKE SNLLVTFSKR RSGLFKKASE LCILCGAEIA IVVFSPGKKV 60 FSFGHPSVES VVERYLAPST PPVAAAPPVT TTAVQLVEAH RSASVRELNV QLHDVLGRLD 120 AERRRGVELS RLRKEGPSGG RWWEAPIKDL SMEELVQLKE AMEDLSKNVS QQAENLMVVE 180 AAAMAAVEPS PFSPPPGFGG GDGSSVVEDR VPGDGLGQLS VTPQGFTLEF DRSFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-16 | 8 | 81 | 2 | 75 | MEF2 CHIMERA |
6byy_B | 2e-16 | 8 | 81 | 2 | 75 | MEF2 CHIMERA |
6byy_C | 2e-16 | 8 | 81 | 2 | 75 | MEF2 CHIMERA |
6byy_D | 2e-16 | 8 | 81 | 2 | 75 | MEF2 CHIMERA |
6bz1_A | 2e-16 | 8 | 89 | 2 | 83 | MEF2 CHIMERA |
6bz1_B | 2e-16 | 8 | 89 | 2 | 83 | MEF2 CHIMERA |
6bz1_C | 2e-16 | 8 | 89 | 2 | 83 | MEF2 CHIMERA |
6bz1_D | 2e-16 | 8 | 89 | 2 | 83 | MEF2 CHIMERA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011088152.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088152.1 | 1e-170 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A068TPM5 | 1e-73 | A0A068TPM5_COFCA; Uncharacterized protein | ||||
STRING | Solyc01g106720.1.1 | 4e-70 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 5e-54 | AGAMOUS-like 62 |