PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_011088151.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

M-type_MADS

Protein Properties

Length: 217aa MW: 24503.9 Da PI: 9.4413

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011088151.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	71	1e-22	16	63	2	49
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ie k qvtfskRr g++KKA+EL++LC++e+a+i+fs+ gk++ + XP_011088151.1 16 KIEVKNHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPAGKVFSF 63 68889999*************************************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.7E-34	7	66	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.1E-28	7	79	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	25.287	7	67	IPR002100	Transcription factor, MADS-box
CDD	cd00265	9.30E-35	8	76	No hit	No description
PRINTS	PR00404	4.7E-19	9	29	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.2E-24	16	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.7E-19	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.7E-19	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MAKKPSMGRQ KIKIEKIEVK NHLQVTFSKR RSGLFKKASE LCTLCGVEIA IIVFSPAGKV 60 FSFGHPNVES IIDRFLARST GPNSHDPFYL VEAQRNASVR ELNLQLGQII NEVEVERKRG 120 ENLDNMRKTN ESHYWWEAPV SKLGLDELEQ LRDAMEELKK NVTQHANKLM NPSSVFVPNR 180 ASGVFDQYES KPSHGIVSSS HVNAAVNSNF GYCHGFF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011088151.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011088151.1	1e-162	agamous-like MADS-box protein AGL62
TrEMBL	A0A2G9GRK5	1e-116	A0A2G9GRK5_9LAMI; MADS box transcription factor
STRING	Migut.B00480.1.p	1e-109	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA204	24	223

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	2e-54	AGAMOUS-like 62