PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011088150.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family M-type_MADS
Protein Properties Length: 369aa    MW: 40637.6 Da    PI: 8.4385
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011088150.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.91e-212976249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +ien++n qvtfskRr g++KKA+ELS+LC+ae a+++fs+  k + +
  XP_011088150.1 29 KIENETNLQVTFSKRRSGLFKKASELSTLCGAESAIVVFSPGEKAHSF 76
                    59***************************************9998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.7542080IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-302079IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-252199IPR002100Transcription factor, MADS-box
CDDcd002656.50E-322192No hitNo description
PRINTSPR004045.5E-192242IPR002100Transcription factor, MADS-box
PfamPF003193.3E-242976IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-194257IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-195778IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MNSSDQNNPQ ENNPSQRKGK GRQKVDMVKI ENETNLQVTF SKRRSGLFKK ASELSTLCGA  60
ESAIVVFSPG EKAHSFGNPD VETIANRFLN QNPHSRSDAD HLLVAHSRAN MRLSNEELTN  120
VEGQLELERK RKQEHKDMRK ADENQNWCPP RIDELDYQQL EELRRSLMSF KQNFENKVQN  180
ATSLANSYVP DAGTAGSFPW TTQSDPSTGF PFNPSIQGPN DQFALYGNRE DMYTSNAPLR  240
IGGSSTTTLF DGGSGTSNIA IPTNPRANYC PNASTFPNLV TTTAGFASSF DPAVGNLGFT  300
VQYPPPPPPS TGSSNMTFPY SYGNSSDMVP YVPGTSNPNL ELERRRRGKA SNNQDKSQGS  360
KGNHGRRSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A4e-1321100182Myocyte-specific enhancer factor 2A
3kov_B4e-1321100182Myocyte-specific enhancer factor 2A
3kov_I4e-1321100182Myocyte-specific enhancer factor 2A
3kov_J4e-1321100182Myocyte-specific enhancer factor 2A
3p57_A4e-1321100182Myocyte-specific enhancer factor 2A
3p57_B4e-1321100182Myocyte-specific enhancer factor 2A
3p57_C4e-1321100182Myocyte-specific enhancer factor 2A
3p57_D4e-1321100182Myocyte-specific enhancer factor 2A
3p57_I4e-1321100182Myocyte-specific enhancer factor 2A
3p57_J4e-1321100182Myocyte-specific enhancer factor 2A
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011088150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0634654e-58KJ063465.1 Sesamum indicum clone TilSSR_34666 microsatellite Sesame_34666 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088150.10.0agamous-like MADS-box protein AGL18
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1979523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-43AGAMOUS-like 62