PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

C3H

Protein Properties

Length: 149aa MW: 16433.7 Da PI: 8.5846

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011088099.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.7	1.1e-09	54	76	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++f tG C+yGd+Ck+ H++ XP_011088099.1 54 VCNRFVLTGSCRYGDSCKYYHPK 76 6********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.15E-11	4	36	No hit	No description
Pfam	PF06220	2.1E-9	5	35	IPR013085	Zinc finger, U1-C type
PROSITE profile	PS50103	13.873	49	77	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.63E-7	51	79	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.7E-4	51	76	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.3E-6	54	75	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.6E-7	54	76	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MPLGKYYCDY CDKQFQDTPA ARRRHLQGVL HQRAKCFSVG LDQVQDPRSV GKGVCNRFVL 60 TGSCRYGDSC KYYHPKKNME NMNTQGMEGT SSVSNAQSRG IPGSTIHVEA SLPAVLLGNQ 120 MGTSLQNLPP SLWPPPEGGY PPLPFIDWG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011088099.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020551848.1	1e-104	zinc finger CCCH domain-containing protein 3
Swissprot	Q0JP11	6e-41	C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBL	A0A2G9I7N4	1e-88	A0A2G9I7N4_9LAMI; U1 snRNP-specific protein C
STRING	Migut.B00859.1.p	9e-71	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12008	18	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26749.1	4e-26	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]