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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011088093.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 274aa MW: 30369.3 Da PI: 9.4332 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.9 | 1.1e-22 | 23 | 70 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ien++n qvtfskRr+g++KKA+ELS+LC+ae a+++fs+ +k + + XP_011088093.1 23 KIENETNLQVTFSKRRAGLFKKASELSTLCGAETALLVFSPGNKAHSF 70 69****************************************998877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.063 | 14 | 74 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.0E-33 | 14 | 73 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.08E-33 | 15 | 88 | No hit | No description |
SuperFamily | SSF55455 | 1.83E-26 | 15 | 86 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-19 | 16 | 36 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-24 | 23 | 70 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-19 | 36 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-19 | 51 | 72 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MSSSRCNNTI SKGKGRRKVN MVKIENETNL QVTFSKRRAG LFKKASELST LCGAETALLV 60 FSPGNKAHSF GHPNVEAIFK RFLDQNISPV SDAEKLLGAH HKANISQRIV ELNQIENRLE 120 LEQKCAIELD QVRKDGQSQQ WYPPTINKLD YRQLDRLKAA LLHFNQKLET KVENATRSMT 180 LCTPKATLNL GTMHKSSGRS VLGVRIDDGA GSPNAQVQAA SNTSSPNVQV CDDPVADRSN 240 AITQHELMLG KSCFTIPYSS KTNGYSVNPD EYHE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-14 | 15 | 118 | 2 | 94 | MEF2C |
5f28_B | 4e-14 | 15 | 118 | 2 | 94 | MEF2C |
5f28_C | 4e-14 | 15 | 118 | 2 | 94 | MEF2C |
5f28_D | 4e-14 | 15 | 118 | 2 | 94 | MEF2C |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011088093.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088093.1 | 0.0 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2K1ZSV2 | 9e-51 | A0A2K1ZSV2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s03430.1 | 2e-50 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-38 | AGAMOUS-like 62 |