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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011088089.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | B3 | ||||||||
Protein Properties | Length: 246aa MW: 28187.7 Da PI: 10.682 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.6 | 2.2e-18 | 11 | 98 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ffkv+ ++++ l lp f+++ + ke+s++ ++++ +W++k++ + ++g++ l++GW Fv a+gL +gDfvvF+++g+ f + v XP_011088089.1 11 FFKVM--IPGFQQK-LNLPPGFCKKLK--KEKSREAIVTS-GKGTWKMKVCRNVGGGMMSLEDGWGAFVCAHGLSVGDFVVFEHTGQLHF--NALV 98 78888..4555555.89******9887..45777888777.5569*****99999999*************************8775444..4444 PP | |||||||
2 | B3 | 58.4 | 1.3e-18 | 140 | 232 | 1 | 91 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 f+ +++p +++k+gr+++p kf+++++++k +s+tl+ d + r W+v++ ++ +++ + +GW +F an+Lk+gD++vF+l++r s++ XP_011088089.1 140 FILTMKPYHAHKQGRVTIPVKFMRSNNLEKISSVTLRSPDHERRAWSVRVLVEETPNLrGRMDRGWHDFYVANKLKDGDVCVFELNRRlSRRP 232 77899999******************99999998888888888*******9944444335699**********************99966654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.8E-21 | 8 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.364 | 8 | 102 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.16E-18 | 9 | 100 | No hit | No description |
SuperFamily | SSF101936 | 1.96E-20 | 9 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.5E-14 | 11 | 102 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.9E-15 | 11 | 95 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-21 | 132 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-19 | 135 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.81E-19 | 138 | 230 | No hit | No description |
PROSITE profile | PS50863 | 12.717 | 140 | 245 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.4E-9 | 140 | 238 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.7E-16 | 140 | 232 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MAEKLAASRH FFKVMIPGFQ QKLNLPPGFC KKLKKEKSRE AIVTSGKGTW KMKVCRNVGG 60 GMMSLEDGWG AFVCAHGLSV GDFVVFEHTG QLHFNALVFD PSACEKEFLV EFKKEHRHQD 120 TANTRRKSGH VSYHSKKPHF ILTMKPYHAH KQGRVTIPVK FMRSNNLEKI SSVTLRSPDH 180 ERRAWSVRVL VEETPNLRGR MDRGWHDFYV ANKLKDGDVC VFELNRRLSR RPTSVSLDVK 240 ILTTLV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011088089.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088089.1 | 0.0 | B3 domain-containing protein Os01g0723500-like | ||||
TrEMBL | A0A2G9H526 | 3e-94 | A0A2G9H526_9LAMI; Uncharacterized protein | ||||
STRING | Migut.D01639.1.p | 1e-77 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8536 | 16 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 5e-21 | B3 family protein |