PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011087824.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family Trihelix
Protein Properties Length: 431aa    MW: 49426.2 Da    PI: 6.462
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011087824.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix83.92e-26113210186
        trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
                     +Wt+q+v++Li+a+++++e+ ++++            kk++W+++sk+m+ergf++sp+qC++k+++lnkrykk++++ +++ ++e++++  ++d
  XP_011087824.1 113 KWTDQMVKLLITAVSYLGEDAGSDNggggrrispllPKKGKWRAISKVMAERGFHVSPQQCEDKFNDLNKRYKKLNDILGRGtSCEVVENPTLLD 207
                     7*********************98888899999999**********************************************6699999999988 PP

        trihelix  84 qle 86 
                      ++
  XP_011087824.1 208 LMD 210
                     876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0057110183IPR001005SANT/Myb domain
PfamPF138375.3E-22111235No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MDGKLLASRN LVQGKSSGFL NLQEPMQANG KRVPQPFQGL VVSHDAQAQD AFPMRNRGGR  60
KSDMPVSFLD GNGEGDTTKN SCDEDGSYAM GEHVDANNES EKEKKESPWQ RVKWTDQMVK  120
LLITAVSYLG EDAGSDNGGG GRRISPLLPK KGKWRAISKV MAERGFHVSP QQCEDKFNDL  180
NKRYKKLNDI LGRGTSCEVV ENPTLLDLMD ISAKSKESVR KILSSKQLFY QEMCSYHNGN  240
RLYIPHDQSI QRSLHLALRN SDDLESHESK AYRSDSINDD EEIDASESQN DNNEEKHPLH  300
DDLRSTRVST KRKKPREPEY LDADHVMDFI ATKKSTPHDH ARTNQVPGQG TTLDWQRNPW  360
FMSRTVQLEE KKLQIEAEML ELEKQRLRWL RFSELEDRDL EKMRLENEYL KLENERLALE  420
IKRQEMGGHA N
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011087824.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552154.10.0uncharacterized protein LOC105169181
TrEMBLA0A2K2BEQ01e-128A0A2K2BEQ0_POPTR; Uncharacterized protein
STRINGXP_006434454.11e-128(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76001830
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-104sequence-specific DNA binding transcription factors