PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011087598.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family NAC
Protein Properties Length: 397aa    MW: 44344.3 Da    PI: 7.4355
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011087598.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.75.6e-50261512128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                     +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ + s++
  XP_011087598.1  26 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSEN 119
                     79***************************.89***************8778899***************************************** PP

             NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                      + +glkktLvfy+g+apkg +t+W+m+eyrl
  XP_011087598.1 120 FRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 151
                     ******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.12E-5525171IPR003441NAC domain
PROSITE profilePS5100555.96625172IPR003441NAC domain
PfamPF023654.9E-2527151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MAIAVTMNNQ EDGTSKHDDH ENDMVMPGFR FHPTEEELVE FYLRRKVEGK RFNVELITFL  60
DLYRYDPWEL PALAAIGEKE WYFYVPRDRK YRNGDRPNRV TTSGYWKATG ADRMIRSENF  120
RSIGLKKTLV FYSGKAPKGI RTSWIMNEYR LPQHETERLQ KAEISLCRVY KRAGVEDHPS  180
LPRSVPTKAS SSSSSRGPQS SRKQQHSQQT TSQEMSFQAN YGGSPPQTDG KISETSQSSS  240
TDMGTSLALS QQNSSYSITP AAALVPNMAN SSTLQTPTAE DDHGVMLQQS KQANSSSSLS  300
PNCPSIYATS SSHAIDDLHK LVNIQAASIN HENHQYNTPN NGPLNLLSHF STQPEPLPAA  360
ALNVVGPGSV PAIFSDRLWD WNAISEAGKD YMTNLFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-552717219165NO APICAL MERISTEM PROTEIN
1ut4_B2e-552717219165NO APICAL MERISTEM PROTEIN
1ut7_A2e-552717219165NO APICAL MERISTEM PROTEIN
1ut7_B2e-552717219165NO APICAL MERISTEM PROTEIN
4dul_A2e-552717219165NAC domain-containing protein 19
4dul_B2e-552717219165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011087598.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087598.10.0NAC domain-containing protein 35
TrEMBLA0A2U5GF651e-178A0A2U5GF65_SALMI; NAC transcription factor 5
STRINGcassava4.1_009166m1e-157(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38882446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.11e-110NAC domain containing protein 35