PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011087346.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 599aa    MW: 68970.9 Da    PI: 5.1831
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011087346.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00065570588220
                     EETTTTEEESSHHHHHHHH CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHi 20 
                     +C++Cg+ F ++  L++H+
  XP_011087346.1 570 VCEKCGEQFDSRNKLHKHL 588
                     6*****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1105.3E-22481IPR001623DnaJ domain
SuperFamilySSF465653.14E-22498IPR001623DnaJ domain
SMARTSM002715.6E-20769IPR001623DnaJ domain
PROSITE profilePS5007618.562877IPR001623DnaJ domain
CDDcd062571.97E-16866IPR001623DnaJ domain
PfamPF002261.1E-19974IPR001623DnaJ domain
PRINTSPR006251.9E-131028IPR001623DnaJ domain
PRINTSPR006251.9E-132843IPR001623DnaJ domain
PRINTSPR006251.9E-134969IPR001623DnaJ domain
PROSITE patternPS0063605473IPR018253DnaJ domain, conserved site
SuperFamilySSF576671.79E-14282335No hitNo description
SMARTSM004513.1E-6288322IPR003604Zinc finger, U1-type
PfamPF121714.4E-10291316IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003553.1291315IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280293315IPR007087Zinc finger, C2H2
SMARTSM003553.4569593IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.598569598IPR007087Zinc finger, C2H2
PROSITE patternPS000280571593IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MASSEKRCLY EVLGLNRDCT ADEIRSAYKR LALQRHPDKL VQSGVPEAEA TAAFQELVNA  60
YEVLSDQRER AWYDSHRNQI LFSSSTATGS SSFVPDLFPF FSNSVYSGYS DSGRGFYKVY  120
GDLFEKIYAN EVNFTKKLGL PLPREAPVMG NLESPYAQVT AFYNYWLGFI TVMDFFWADQ  180
YDAMAGPNRK SRRVMEEENK KLRKKARREY NETVRGLAEF VKKRDKRVID MQVKRNEEME  240
RKKEEEKRRK KELERQKAEK ARNYEEQEWA KVEEVEEDEA ENMLEEKKQE FYCVVCSKKF  300
KSDKQWKNHE QSKKHKEKVA ELREAFREED EEYEATEGSE REAEEEKEVE GDVVGDLSAT  360
NRVNDLPEQF EDAVVIEGDD SDDGKTASSE VDEFSGTDNH SRWKGIAAEL GSDDDEASMI  420
EAMLSRSKGT SKNQPKASSN KTQVEMDGDE LEFMEYNNTK GSRRNRGSRR QRGRRQEEEG  480
ETMKADVPER NGEAGEQDER DDDAEESSSH PLPEPEARRR VDDATERSHK RPQQAVNKKN  540
TAKKENASRL KAASKGRKQK VATNGSDTNV CEKCGEQFDS RNKLHKHLGD TGHASLRSR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199207KKLRKKARR
2462475RRNRGSRRQRGRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011087346.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087346.10.0DNAJ protein JJJ1 homolog
SwissprotQ9C9111e-172JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A2G9H5330.0A0A2G9H533_9LAMI; Molecular chaperone (DnaJ superfamily)
STRINGMigut.D01668.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61101516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-132DNAJ heat shock N-terminal domain-containing protein