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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011087345.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | bHLH | ||||||||
Protein Properties | Length: 238aa MW: 25802.7 Da PI: 10.8409 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 52.5 | 9e-17 | 22 | 67 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN+++ +L++l+P+a K +Ka++L +++eY+k+Lq XP_011087345.1 22 HNQSERRRRDRINEKMKTLQKLVPNA-----SKTDKASMLDEVIEYLKQLQ 67 9************************9.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 18 | 17 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.4E-20 | 20 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.2E-14 | 22 | 67 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.39E-17 | 22 | 71 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.1E-20 | 22 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.0E-18 | 23 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MTNGQSFRSQ SSTRRSRAAA IHNQSERRRR DRINEKMKTL QKLVPNASKT DKASMLDEVI 60 EYLKQLQAQV QMMSSARNMP QMIVPLGMQQ QLQMALLARM GIGMGMGMGM GMSGMGMGML 120 DVNNLAQNLP RSVPPFIHAA AASPLGGTTT ASFVSPPFAM PPMVPSPPPA TAPLKANVDA 180 AHVNASVPNF NDAYNTFLTQ QSMNMDLFNK MAAALYRSQQ PNQPLTSSHS HPNDAAAD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 25 | 30 | ERRRRD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011087345.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011087345.2 | 1e-173 | transcription factor UNE10-like | ||||
TrEMBL | A0A4D9A5J7 | 5e-77 | A0A4D9A5J7_SALSN; Phytochrome-interacting factor 3 | ||||
STRING | XP_002514702.1 | 2e-67 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5437 | 17 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 6e-28 | bHLH family protein |