PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011087339.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bHLH

Protein Properties

Length: 429aa MW: 46708.3 Da PI: 7.5954

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011087339.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.7	3.8e-12	358	403	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l P+ +k + a++L +AveYIk+Lq XP_011087339.1 358 SIAERMRRTRISEKMKKLQDLFPNM----DKQTNTADMLDLAVEYIKDLQ 403 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.329	352	402	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.07E-15	355	416	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.43E-12	356	407	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.4E-15	357	414	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-12	358	408	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.9E-9	358	403	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MFRSETTSRN SSSSFLLSNP GGNQSSFKHV SAAEGDFFKS RDQFMGSDLF HNQSQQSCGL 60 ARFRSAPSSF LAALLDSTTD NSSSGDESEA LLMSAFMNGP PDLNHKGSNN NGGNQVLHYQ 120 QHMKQEAGVE SDPRPGFVNG QMGYETAVSG GGGAIVGSYS VGMESQVHVA VSSNSSNLVR 180 QSSSPAGFFN GYGVMGEVGN YRVHNQAKAN ASASNGMSNH MNFSSAPCSS SRYMPSIPEN 240 VNESISTCNP ENGQSRNSDS GNGREYEAGF THDSWNGSPF NNLKRNRDGD LKMFSNFNGL 300 ENQNGETRKS TPGLVHHLSL PKNSSAEMAE VEKFLQFQQD TVPCQIRAKR GCATHPRSIA 360 ERMRRTRISE KMKKLQDLFP NMDKQTNTAD MLDLAVEYIK DLQKQVQTLS ETRAKCSCST 420 KPQQTSPTT

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MFRSETTSRN SSSSFLLSNP GGNQSSFKHV SAAEGDFFKS RDQFMGSDLF HNQSQQSCGL  60
ARFRSAPSSF LAALLDSTTD NSSSGDESEA LLMSAFMNGP PDLNHKGSNN NGGNQVLHYQ  120
QHMKQEAGVE SDPRPGFVNG QMGYETAVSG GGGAIVGSYS VGMESQVHVA VSSNSSNLVR  180
QSSSPAGFFN GYGVMGEVGN YRVHNQAKAN ASASNGMSNH MNFSSAPCSS SRYMPSIPEN  240
VNESISTCNP ENGQSRNSDS GNGREYEAGF THDSWNGSPF NNLKRNRDGD LKMFSNFNGL  300
ENQNGETRKS TPGLVHHLSL PKNSSAEMAE VEKFLQFQQD TVPCQIRAKR GCATHPRSIA  360
ERMRRTRISE KMKKLQDLFP NMDKQTNTAD MLDLAVEYIK DLQKQVQTLS ETRAKCSCST  420
KPQQTSPTT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011087339.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087339.1	0.0	transcription factor bHLH130
TrEMBL	A0A2G9FZD6	0.0	A0A2G9FZD6_9LAMI; Uncharacterized protein
STRING	Migut.B01333.1.p	1e-143	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4435	22	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	2e-57	bHLH family protein