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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011087284.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 389aa MW: 44577.4 Da PI: 6.5142 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.3 | 3e-21 | 10 | 53 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 r e+ s rqvt+ kRrngilKKA+E+SvLCd+++ +++fs+tgk XP_011087284.1 10 RLESLSSRQVTYGKRRNGILKKAQEISVLCDIDIILLMFSPTGK 53 678999************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 23.927 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.1E-28 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.23E-25 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.9E-18 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.0E-18 | 12 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.9E-18 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.9E-18 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MGRVKLKIQR LESLSSRQVT YGKRRNGILK KAQEISVLCD IDIILLMFSP TGKPSIFRGQ 60 RSNIDEMIAK YAQLTPKERA KRRLESLETL KRNFKKVDQD VDIEEFLDAS SPSVEEMQNR 120 VMVLQSQLTE VHKRLSWWTN PDKIEDIEHL NQMENSLRES LNRMRLHKVS DGWLTECANS 180 WRNMKQQSYV GWNKLLNGLN SSFGLIPIIS FDCTSQSQNG MHFPIMASND PDCQTQTWHP 240 GGVREHMILP NEPHFLTSRD MECSRDMSFP SCSGFFGNVK NQDIDKAIPQ KNDRQDDGIT 300 IDDYAGSSFL RLPLAEQYPF HTFGNFSFPD MIEPGRDANF QPAPIDYQIN GNFELPRSVY 360 NSLVPPAASC AISIFNDNSY PQPPNQFNA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-15 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_B | 2e-15 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_C | 2e-15 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_D | 2e-15 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011087284.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011087284.1 | 0.0 | agamous-like MADS-box protein AGL65 | ||||
TrEMBL | A0A022R6G6 | 0.0 | A0A022R6G6_ERYGU; Uncharacterized protein | ||||
TrEMBL | A0A2Z7APF1 | 0.0 | A0A2Z7APF1_9LAMI; Uncharacterized protein | ||||
STRING | Migut.I00190.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7640 | 21 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18750.1 | 9e-76 | AGAMOUS-like 65 |