PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011087283.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

WRKY

Protein Properties

Length: 559aa MW: 60385 Da PI: 6.7053

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011087283.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.7	3.3e-30	214	273	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+ ed +++++tYeg+Hnh+ XP_011087283.1 214 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRCMEDMSILITTYEGTHNHP 273 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.9E-31	199	273	IPR003657	WRKY domain
SuperFamily	SSF118290	6.54E-27	206	274	IPR003657	WRKY domain
PROSITE profile	PS50811	27.152	209	275	IPR003657	WRKY domain
SMART	SM00774	6.1E-36	214	274	IPR003657	WRKY domain
Pfam	PF03106	1.1E-26	215	273	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 559 aa Download sequence Send to blast
MDSTSLHKAA VLDGAFEENK ASESDRGKKS RGGEIAFQLE DKLVSAKSEM DEVMEENQKL 60 RMCLNRILED YRTLEMQYRD VIQQEAKKSP TTVPTHQDHD TEEPELIALS LGRTSSNKIR 120 DELNKIPTVE DEGVTLGLEC KHDVPKMLSQ AETTSLNPSP ENSLEEVKEE DAGETRKHKA 180 MNNAGDGGDD EILQQNPVKR ARVSVRVRCD TPTMNDGCQW RKYGQKIAKG NPCPRAYYRC 240 TVAPSCPVRK QVQRCMEDMS ILITTYEGTH NHPLSVSATA MASTTSAAAS MLLSGSSTSG 300 GSGSSSTTSS LNGLNFYLSE NSRSKPFYLP NSSISSSSAY PTITLDLTSS SSSSSSHLSR 360 LGNFPPRYPT TNLNFSSSQS NALPVVSWSN NGILSYGTQP CSRNQTTTSL SFQANPNETL 420 YQSYLQKSTI NPNQQTLAPD TIAAATKAIT LNPSFQSALA AALSSIMGSG GANNSTTCIQ 480 NVVENSKQSV KSSDPFPTLS SFPSSTTNIV KKCSPGFLEK SSSTTSSQLG GLTILSPSFP 540 LSNSKSKSNS RGDNRDELI

Sequence ? help Back to Top

Protein Sequence Length: 559 aa Download sequence Send to blast

MDSTSLHKAA VLDGAFEENK ASESDRGKKS RGGEIAFQLE DKLVSAKSEM DEVMEENQKL  60
RMCLNRILED YRTLEMQYRD VIQQEAKKSP TTVPTHQDHD TEEPELIALS LGRTSSNKIR  120
DELNKIPTVE DEGVTLGLEC KHDVPKMLSQ AETTSLNPSP ENSLEEVKEE DAGETRKHKA  180
MNNAGDGGDD EILQQNPVKR ARVSVRVRCD TPTMNDGCQW RKYGQKIAKG NPCPRAYYRC  240
TVAPSCPVRK QVQRCMEDMS ILITTYEGTH NHPLSVSATA MASTTSAAAS MLLSGSSTSG  300
GSGSSSTTSS LNGLNFYLSE NSRSKPFYLP NSSISSSSAY PTITLDLTSS SSSSSSHLSR  360
LGNFPPRYPT TNLNFSSSQS NALPVVSWSN NGILSYGTQP CSRNQTTTSL SFQANPNETL  420
YQSYLQKSTI NPNQQTLAPD TIAAATKAIT LNPSFQSALA AALSSIMGSG GANNSTTCIQ  480
NVVENSKQSV KSSDPFPTLS SFPSSTTNIV KKCSPGFLEK SSSTTSSQLG GLTILSPSFP  540
LSNSKSKSNS RGDNRDELI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-19	201	274	1	73	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011087283.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087283.2	0.0	probable WRKY transcription factor 61
Swissprot	A0A3Q7GFB5	1e-134	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A2G9G0I2	0.0	A0A2G9G0I2_9LAMI; Uncharacterized protein
STRING	XP_010256554.1	1e-156	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1945	24	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18860.1	1e-63	WRKY DNA-binding protein 61

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]