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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011087055.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 363aa MW: 40021.3 Da PI: 4.7365 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.5 | 9.9e-18 | 206 | 260 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k XP_011087055.1 206 RKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 260 778899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 127 | 8.2e-41 | 206 | 296 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk XP_011087055.1 206 RKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLSEENRRLHKELQELR-ALK 296 69*************************************************************************************9.555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.9E-17 | 191 | 260 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.31E-18 | 196 | 263 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.119 | 202 | 262 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-15 | 204 | 266 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.2E-15 | 206 | 260 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.82E-16 | 206 | 263 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 237 | 260 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 5.8E-25 | 262 | 305 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 9.9E-11 | 262 | 296 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MELGLSLGDG VGFLREDNNT EKSTKQKIKS TGLDFCMGLG LNSSAAAGGD DQEREKPQKI 60 TNEDDDDDDD DDDDDQMSEG DNQGSDDDNT PVQLNLLPLA PVPRRALPNW STSDNGSPEN 120 GSSGNMGLPV AARGLDVNRF PPAEEVSSAN SVGTTSPFHM EFGLLRRGTG YLQLGGQKRA 180 FEAATGNDVV ESERGSDDDE NGLQTRKKLR LSKEQSAFLE ESFKEHSTLN PKQKLALAKQ 240 LNLRPRQVEV WFQNRRARTK LKQTEVDCEY LKRCCETLSE ENRRLHKELQ ELRALKTSNP 300 FYMQLPATTL TMCPSCERVA TAPPPTAAAE SIPKPIPAFP LTRPRFYPFS QTPTGHPNQP 360 APS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 204 | 210 | TRKKLRL |
2 | 254 | 262 | RRARTKLKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011087055.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011087055.1 | 0.0 | homeobox-leucine zipper protein HOX11-like isoform X2 | ||||
TrEMBL | A0A2G9I609 | 1e-154 | A0A2G9I609_9LAMI; Transcription factor HEX | ||||
STRING | XP_009617361.1 | 1e-132 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 2e-65 | homeobox from Arabidopsis thaliana |