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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011086973.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 727aa MW: 79851.4 Da PI: 6.3457 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.3 | 3.7e-20 | 30 | 85 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q+++Le++F+++++p++++r +L+++l+L rq+k+WFqNrR+++k XP_011086973.1 30 KKRYHRHTAHQIQRLEAMFKECPHPDEKTRNQLSRELNLHPRQIKFWFQNRRTQMK 85 678899***********************************************998 PP | |||||||
2 | START | 175.9 | 2.5e-55 | 231 | 455 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 +a a++el+++ +++ep+W ks+ e +n + + + f++ ++ ++ea+r+sgvv+m+ lve ++d + +W e ++ +a t+e XP_011086973.1 231 IAANAMDELIRLLQSDEPLWIKSAdgrETLNLESYQRMFQSPNShlknpnIRIEASRDSGVVIMNGLALVEMFMDAN-KWVELFPtivsRARTME 324 67889*******************996555555555555444448999999**************************.******99999****** PP EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS START 84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171 vissg g+l lm+ elq+ls lvp R +f+R+++q ++g+w+ivdvS d + + ++ ss+ +a +lpSg+li++++ng+skvtwveh++ XP_011086973.1 325 VISSGmlgnqsGTLLLMYEELQVLSALVPtRQLYFLRFCQQIEQGSWAIVDVSYDIPHQESQFSSSCKAYRLPSGCLIQDMPNGYSKVTWVEHWE 419 *******************************************************99999999999***************************** PP --SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 172 lkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 ++++ p h l+r lv+sgla+ga +w++tlqr ce+ XP_011086973.1 420 VEDKAPiHRLYRDLVHSGLAFGAERWLSTLQRICER 455 **********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.19E-21 | 12 | 87 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.2E-23 | 18 | 89 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.54 | 27 | 87 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-19 | 28 | 91 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.61E-19 | 29 | 88 | No hit | No description |
Pfam | PF00046 | 1.0E-17 | 30 | 85 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 62 | 85 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 49.621 | 221 | 458 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.85E-35 | 222 | 456 | No hit | No description |
CDD | cd08875 | 1.84E-118 | 225 | 454 | No hit | No description |
SMART | SM00234 | 1.1E-45 | 230 | 455 | IPR002913 | START domain |
Pfam | PF01852 | 5.0E-47 | 231 | 455 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.0E-4 | 232 | 440 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 4.21E-22 | 477 | 718 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 727 aa Download sequence Send to blast |
MEFSSGGGGG GGGGSSGGDP GDGSDSHRRK KRYHRHTAHQ IQRLEAMFKE CPHPDEKTRN 60 QLSRELNLHP RQIKFWFQNR RTQMKAQHER ADNCALRAEN DKIRCENIAI REALKNVICP 120 SCGGPPVSED SYFDETKLRM ENAHLKEELD RVSSIAAKYI GRPISQLPPV QPIHVSSLDL 180 SMASFGGHGI PGPSLDLDLD LLPGSSSSVI PNLAFPPMSI SDMDKSLMAD IAANAMDELI 240 RLLQSDEPLW IKSADGRETL NLESYQRMFQ SPNSHLKNPN IRIEASRDSG VVIMNGLALV 300 EMFMDANKWV ELFPTIVSRA RTMEVISSGM LGNQSGTLLL MYEELQVLSA LVPTRQLYFL 360 RFCQQIEQGS WAIVDVSYDI PHQESQFSSS CKAYRLPSGC LIQDMPNGYS KVTWVEHWEV 420 EDKAPIHRLY RDLVHSGLAF GAERWLSTLQ RICERFACLL VTGNSTRDLG GVIPSLEGKR 480 SMMKLAERMV NNFCSSINPS NGQQWTTLSV LNEFEVRATL HKSTDPGQPN GVVLSAAATI 540 WLPIPPQIVF NFFRDERTRP QWDVLSNQNP VQEVAHIANG SHPGNCISVL RAFNTSQNNM 600 LILQESCIDS SGSLVVYCPV DLPAINIAMS GEDPSYIPLL PSGFTISPDG RPDHNQAGGV 660 TGGDGASTSS NTGIGGNSSG SLITVVFQIL VSNLPSARMS PESVTTVNNL IGNTVHQIKA 720 ALNCSTS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 4 | 14 | SGGGGGGGGGS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011086973.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011086973.1 | 0.0 | homeobox-leucine zipper protein HDG11 | ||||
Swissprot | Q9FX31 | 0.0 | HDG11_ARATH; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | A0A2Z7BLK0 | 0.0 | A0A2Z7BLK0_9LAMI; Uncharacterized protein | ||||
STRING | Migut.O00242.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2490 | 23 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |