PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011086854.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family CO-like
Protein Properties Length: 424aa    MW: 46657.3 Da    PI: 7.5328
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011086854.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.21.5e-07241437
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                     +C+ ++e +++l+C+ ++  lC +C ++ H+       H
  XP_011086854.1  2 VTCDFCGERPAILYCRADSAKLCLSCDQHVHSAnalakkH 41
                    68***************************99545555555 PP
2zf-B_box24.55.8e-084488341
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                     ++C+++  +++++ C +++  lC++C    H +      H+++p
  XP_011086854.1 44 SQICDNCAAEPASIRCATDGLVLCQECDWDAHGScavssaHDRSP 88
                    579*************************99994488888888776 PP
3CCT64.53e-22376420145
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                     R +a++RYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk++e
  XP_011086854.1 376 RGNAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKASE 420
                     7789**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.04146IPR000315B-box-type zinc finger
SMARTSM003368.6E-11146IPR000315B-box-type zinc finger
PfamPF006437.0E-6341IPR000315B-box-type zinc finger
CDDcd000212.94E-8434No hitNo description
PROSITE profilePS501199.9684289IPR000315B-box-type zinc finger
PfamPF006436.6E-64588IPR000315B-box-type zinc finger
CDDcd000211.89E-64689No hitNo description
SMARTSM003360.794789IPR000315B-box-type zinc finger
PfamPF062031.6E-16376418IPR010402CCT domain
PROSITE profilePS5101714.912376418IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MVTCDFCGER PAILYCRADS AKLCLSCDQH VHSANALAKK HLRSQICDNC AAEPASIRCA  60
TDGLVLCQEC DWDAHGSCAV SSAHDRSPVE GFSGCPSAFD LASAWGLEIE EKKTTSYEWG  120
GLLEELMVPN ASSVIYSNYG GELVKKKSPN CGKQKQVILK QLLELLADSG GVAVVAGRRX  180
PPTPSSARPQ ENMCGQYEEQ PQEQKQQGGG FTSLLMMQTL ENSKEESNML WNTRTCDHSA  240
QIWDFNLGQL RGHEESSPLE LEYDGSDMVY TVKNYGELLK EASGAKRIRV DLSGANCSIA  300
HEDMIPFSSA SNNRTPSQGP ATSESNNLPV SRPSSCSGFS KPSKDFQFMD QSILMKSESV  360
AAAMTKADIE LLAKNRGNAM QRYKEKKKTR RYDKHIRYES RKARADTRKR VKGRFVKASE  420
AVTG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011086854.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086854.20.0LOW QUALITY PROTEIN: zinc finger protein CONSTANS-LIKE 14
TrEMBLA0A2G9I1Y50.0A0A2G9I1Y5_9LAMI; Uncharacterized protein
STRINGMigut.K01031.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67032126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.11e-105B-box type zinc finger protein with CCT domain