PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011086824.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | RAV | ||||||||
Protein Properties | Length: 349aa MW: 40523.5 Da PI: 8.3017 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 27.5 | 8e-09 | 52 | 98 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 ++kGV ++g W A+I+ + r++lg+f ++ +Aa a++ a+ kl+ XP_011086824.1 52 RFKGVV-PQQNGHWGAQIYA------NhHRVWLGTFKSEIDAAMAYDSAAIKLR 98 578885.556899****999......44**********99************98 PP | |||||||
2 | B3 | 84.2 | 1.1e-26 | 172 | 273 | 1 | 88 |
EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 f+k+ltpsdv+k++rlv+pk++a +h g + +++l ++d++ + W+++++y+k+s+++v+t+GW++Fvk+++L+++D++ XP_011086824.1 172 FQKELTPSDVGKLNRLVIPKRYAVKHfpnvpdpsdysldiaGRV--DEVQLEFYDRQMNLWKFRYCYWKSSQSFVFTRGWNRFVKEKRLRANDTI 264 99*************************99999998888875433..6789********************************************* PP EEE.E-SSS CS B3 81 vFk.ldgrs 88 F+ +++r+ XP_011086824.1 265 AFYmYESRD 273 **9433333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.97E-14 | 52 | 108 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.01E-21 | 52 | 109 | No hit | No description |
SMART | SM00380 | 1.7E-18 | 52 | 113 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.8E-16 | 52 | 107 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.463 | 52 | 107 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 5.6E-31 | 167 | 273 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.31E-26 | 169 | 272 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.63E-23 | 171 | 277 | No hit | No description |
SMART | SM01019 | 4.5E-19 | 172 | 280 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-23 | 172 | 271 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.055 | 172 | 290 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MKDELQYSFR LRMEEEMLSM ISHAKLNMNE ESSDSNCSIY VTNACKRSRV ERFKGVVPQQ 60 NGHWGAQIYA NHHRVWLGTF KSEIDAAMAY DSAAIKLRSG DTHRNFPWTN ISIQEPKFQS 120 HFTTDVVLNM IRDGSYPAKF ADFLRSQRGE IEIGLNLSSF HGDGQFSCNL LFQKELTPSD 180 VGKLNRLVIP KRYAVKHFPN VPDPSDYSLD IAGRVDEVQL EFYDRQMNLW KFRYCYWKSS 240 QSFVFTRGWN RFVKEKRLRA NDTIAFYMYE SRDGRRFGQS FLVIDVASKD ESRNDNNTKM 300 ELGRVTNNSD EVKQDKVENG NHNSFVEILT LQAPSSDTKG FRLFGVQID |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 3e-28 | 171 | 273 | 13 | 107 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011086824.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011086824.1 | 0.0 | AP2/ERF and B3 domain-containing transcription factor At1g50680-like | ||||
Swissprot | Q9C6P5 | 6e-97 | RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680 | ||||
TrEMBL | A0A2Z7CBN5 | 1e-157 | A0A2Z7CBN5_9LAMI; Uncharacterized protein | ||||
STRING | VIT_11s0037g00010.t01 | 1e-131 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5252 | 23 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50680.1 | 2e-99 | RAV family protein |