PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011086818.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family CAMTA
Protein Properties Length: 940aa    MW: 105366 Da    PI: 6.6032
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011086818.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1167.12.8e-52131264116
            CG-1   4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 
                     e ++rwlk+ e+  iL+n+e+h+lt++ +++p sgsl L+n++++++frkDG+ w+++kd +t+ E+he+LKvg+ve+l+cyYah+eenp+fqrr
  XP_011086818.1  13 EaQTRWLKPVEVFFILQNYEEHQLTHQIPQKPASGSLYLFNKRVLKFFRKDGHRWRRRKDQRTIAEAHERLKVGNVEALNCYYAHGEENPNFQRR 107
                     5599******************************************************************************************* PP

            CG-1  98 cywlLeeelekivlvhyle 116
                     +yw+L+ ++e+ivlvhy++
  XP_011086818.1 108 SYWILDPAYEHIVLVHYRD 126
                     *****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143775.087133IPR005559CG-1 DNA-binding domain
SMARTSM010764.9E-6810128IPR005559CG-1 DNA-binding domain
PfamPF038593.1E-4613126IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.2E-7372459IPR013783Immunoglobulin-like fold
CDDcd001021.29E-5374459No hitNo description
SuperFamilySSF812962.67E-16374458IPR014756Immunoglobulin E-set
PfamPF018335.4E-7374457IPR002909IPT domain
CDDcd002043.48E-15561662No hitNo description
Gene3DG3DSA:1.25.40.201.3E-16562662IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.82E-17567664IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.812570662IPR020683Ankyrin repeat-containing domain
PfamPF127962.2E-8586664IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.167603635IPR002110Ankyrin repeat
SMARTSM002485.8E-4603632IPR002110Ankyrin repeat
SMARTSM00248890642671IPR002110Ankyrin repeat
SMARTSM0001515723745IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.657724751IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525402.66E-6775831IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000152.2783805IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.004784813IPR000048IQ motif, EF-hand binding site
PfamPF006120.02786804IPR000048IQ motif, EF-hand binding site
SMARTSM000154.2E-4806828IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.883807832IPR000048IQ motif, EF-hand binding site
PfamPF006122.9E-5809828IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 940 aa     Download sequence    Send to blast
MQSGYDINHL AREAQTRWLK PVEVFFILQN YEEHQLTHQI PQKPASGSLY LFNKRVLKFF  60
RKDGHRWRRR KDQRTIAEAH ERLKVGNVEA LNCYYAHGEE NPNFQRRSYW ILDPAYEHIV  120
LVHYRDIGEG RQNAGSTSQF SSLSSTFSPS PNSFATLPPE SSVVIGESYE LYHNQSSPST  180
VEINSSEVIK NHEMNYLDNR ERTDEVNSSS APDLSKALRR IEQQLSLNDD EGNEISTFYI  240
QNEDSNDFED VLCNYDLSGQ TPNNPDNLLQ QQSDDGIQQQ QLPEVKVNVW NEMLDTSRNF  300
PNVEGQGQLS RQYARKSSLI PQEVVSMKYP AYSPALNAYD MSPDAHSSFF DQNKLGISLE  360
DSISLTIAPK QKFTIREICP DWCYTSEGAK VVIIGSFLCN PSECSWACMF GDTEVPVQII  420
QEGVISCRAP PHLQGKVILC ITSGNRESCS EVREFEYRDK PSVCMHNNPP QTEASKSSEE  480
LLLLVRFVQM LLTDSFPKGD VSESRVDLLG KSGTAEDSWS QIFEALLVGS TTSSSTLDWL  540
LQELLKDKLE AWLSSRSQMN NYDGCSLSKK QQGIIHMVAG LGFQWALQPI LSSGVSVNFR  600
DINGWTALHW AAKFGREKMV AALIASGASA GAVTDPNSQD PNGKTPASIA ASCGHRGLAG  660
YLSEIALTSH LSSLTLEESE LSKGSAAVEA ERTVNSLSKT ANASSCSNED QVSLKHTLAA  720
VRNAAQAAAR IQSAFRAHSF RKRQQREAAH SIVGASGDVY SILENDIHGL SAASKLAFRN  780
TREYNSAALS IQKKYRGWKG RKDFLSLRQK VVKIQAHVRG YQVRKHYKVC WAVGILEKVV  840
LRWRRRGVGL RGFRQDSESI DDSEDEDILK VFRKQKVDAA IDEAVSRVLS MVESPEARQQ  900
YHRLLQKYRQ AKAELENTES DSAFSSHHDT PSYDGISHVT
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011086818.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086818.10.0calmodulin-binding transcription activator 4
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A2G9H1X50.0A0A2G9H1X5_9LAMI; Uncharacterized protein
STRINGMigut.E00009.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39322037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]