PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

SBP

Protein Properties

Length: 469aa MW: 51161.2 Da PI: 7.6108

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011086813.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.1	6.7e-40	182	259	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +C vegC+ dls+akeyhr+h+vC+ hsk+p+v+v gle+rfCqqCsrfh+lsefDe+krsCrrrL++hn+rrrk+++ XP_011086813.1 182 RCVVEGCNIDLSTAKEYHRKHRVCDSHSKCPKVVVGGLERRFCQQCSRFHTLSEFDEKKRSCRRRLSDHNARRRKPHQ 259 6**************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.7E-33	179	244	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.188	180	257	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.09E-37	181	262	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.6E-30	183	256	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence Send to blast
MSHFAEMEWN SKWDWENFLG FGSKAIESPK KLQLADWTIV DDGQIDAGSF NLSAGGGNSG 60 ASDSDGGHVS SAKSSISAST DSSTKDGMQN PNFGLITFQG FSGNFSKKME MEGADVSGTS 120 PLMDASIGSV EPLIGLKLGK RTYFENSGAG GNVKTAPLSA MPTPATSLKK TKSLGQNLPI 180 PRCVVEGCNI DLSTAKEYHR KHRVCDSHSK CPKVVVGGLE RRFCQQCSRF HTLSEFDEKK 240 RSCRRRLSDH NARRRKPHQE AIQFNSTRLS SPFYEARQQI SFLLNNAPLI HSRNPANTTW 300 DGASNSKFTL TKGYHFKSNG DGGTDEQMHM PGINLPHAID MHGTAANDFL VSKSSIPTVL 360 DPGSKGPLMS SHLDAAPEYR CALSLLSSNS WSSCGPELMP VNNQMDELGT SVDQRMMHAT 420 PEGVPLSSSQ FWLTGHQPTQ PRVATNGNFQ EVQLLKTPYE ADFYSNILN

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence Send to blast

MSHFAEMEWN SKWDWENFLG FGSKAIESPK KLQLADWTIV DDGQIDAGSF NLSAGGGNSG  60
ASDSDGGHVS SAKSSISAST DSSTKDGMQN PNFGLITFQG FSGNFSKKME MEGADVSGTS  120
PLMDASIGSV EPLIGLKLGK RTYFENSGAG GNVKTAPLSA MPTPATSLKK TKSLGQNLPI  180
PRCVVEGCNI DLSTAKEYHR KHRVCDSHSK CPKVVVGGLE RRFCQQCSRF HTLSEFDEKK  240
RSCRRRLSDH NARRRKPHQE AIQFNSTRLS SPFYEARQQI SFLLNNAPLI HSRNPANTTW  300
DGASNSKFTL TKGYHFKSNG DGGTDEQMHM PGINLPHAID MHGTAANDFL VSKSSIPTVL  360
DPGSKGPLMS SHLDAAPEYR CALSLLSSNS WSSCGPELMP VNNQMDELGT SVDQRMMHAT  420
PEGVPLSSSQ FWLTGHQPTQ PRVATNGNFQ EVQLLKTPYE ADFYSNILN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	6e-28	183	256	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	238	255	KKRSCRRRLSDHNARRRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011086813.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011086813.1	0.0	squamosa promoter-binding-like protein 12
TrEMBL	A0A2G9H1C0	0.0	A0A2G9H1C0_9LAMI; Uncharacterized protein
STRING	Migut.K00951.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4129	24	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.3	2e-63	squamosa promoter binding protein-like 2