PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_011086780.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

NF-YC

Protein Properties

Length: 135aa MW: 15497 Da PI: 10.4893

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011086780.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	44.3	3.8e-14	12	96	14	97
NF-YC 14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97 +++++ e+P r+k+i+k d+d++++ +ea l++ + elfi l+ +s a e+k+rt++ + a +r + dfl+d p XP_011086780.1 12 AEIHKLEIPTRRVKNIMKLDKDINKVNSEALFLVASSTELFIQFLAEKSAHVALEKKKRTVRVEHMRVAAKRHRpTGDFLLDSLP 96 56778899*******************************************************998888764388***988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.18E-16	15	99	IPR009072	Histone-fold
Pfam	PF00808	8.2E-17	18	80	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	6.0E-18	20	96	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
MAQQEEDPNP IAEIHKLEIP TRRVKNIMKL DKDINKVNSE ALFLVASSTE LFIQFLAEKS 60 AHVALEKKKR TVRVEHMRVA AKRHRPTGDF LLDSLPMPPQ PAEQNPPKDQ AKTRLDKKPV 120 PFATRSIEAF FQKFT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011086780.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011086780.2	7e-93	nuclear transcription factor Y subunit gamma isoform X1
Refseq	XP_011086781.2	7e-93	nuclear transcription factor Y subunit gamma isoform X2
TrEMBL	A0A2G9GVN9	1e-72	A0A2G9GVN9_9LAMI; Uncharacterized protein
STRING	Migut.K00728.1.p	1e-66	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11435	24	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43250.1	3e-35	nuclear factor Y, subunit C13