PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

NF-YC

Protein Properties

Length: 272aa MW: 30133.1 Da PI: 6.8004

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011086340.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	176.7	2.2e-55	85	189	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw++q ie++tdfknh+lPlarikki+kad+dv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fdfl XP_011086340.1 85 QLQAFWANQmqeIEQTTDFKNHSLPLARIKKIMKADKDVRMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFL 179 89****988889***************************************************************************** PP NF-YC 93 vdivprdelk 102 vdi+prdelk XP_011086340.1 180 VDIIPRDELK 189 *****975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.64E-33	73	179	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	3.8E-37	99	171	IPR009072	Histone-fold
Pfam	PF00808	3.5E-21	107	170	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MDHSDQRQQF THHNQQQQQP AAGVVAGSGQ VAYASAPYQA APMVGTSAPA VTVSSPTQPP 60 AGFAPQQQLG YHQPQHFHSQ QQQQQLQAFW ANQMQEIEQT TDFKNHSLPL ARIKKIMKAD 120 KDVRMISAEA PVVFAKACEM FILELTLRSW IHTEENKRRT LQKNDIAAAI SRTDVFDFLV 180 DIIPRDELKE EGLGITKAAI PLVGSPDALP YYYVPPQPPI AAAGMMMGKP VDQAALYASQ 240 QPRPPLPFMP WPQSHTQSPS QQPPPQQQQG DS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-58	93	185	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	157	163	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011086340.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011086340.1	0.0	nuclear transcription factor Y subunit C-2-like
Refseq	XP_011086341.1	0.0	nuclear transcription factor Y subunit C-2-like
Refseq	XP_011086342.1	0.0	nuclear transcription factor Y subunit C-2-like
Refseq	XP_011086343.1	0.0	nuclear transcription factor Y subunit C-2-like
Swissprot	Q8LCG7	6e-80	NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBL	A0A4D9B5N4	1e-128	A0A4D9B5N4_SALSN; Uncharacterized protein
STRING	XP_008346078.1	1e-121	(Malus domestica)
STRING	XP_008356118.1	1e-121	(Malus domestica)
STRING	XP_008372003.1	1e-121	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3422	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	3e-74	nuclear factor Y, subunit C2

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li S, et al. HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis. Plant Cell, 2014. 26(4): p. 1764-1780 [PMID:24728648] Mei X, et al. Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm. Mol. Genet. Genomics, 2015. 290(5): p. 1819-31 [PMID:25851237] Baud S, et al. Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed. Plant Physiol., 2016. 171(2): p. 1099-112 [PMID:27208266] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]