PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011086315.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family NAC
Protein Properties Length: 328aa    MW: 37470.1 Da    PI: 7.5357
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011086315.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.62.9e-54101391128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPtdeel+ +yL+kkv+ ++++l +vi+evd++k+ePwdL++  ++ +  ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++
  XP_011086315.1  10 VPPGFRFHPTDEELLYYYLRKKVSYQHIDL-DVIREVDLNKLEPWDLKEkcRIGSgPQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAI 103
                     69****************************.9***************952444443456************************************ PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + ++++ +g++ktLvfy+grap+g+ktdW+mheyrl
  XP_011086315.1 104 HLSTSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRL 139
                     **********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.11E-596161IPR003441NAC domain
PROSITE profilePS510055810161IPR003441NAC domain
PfamPF023652.7E-2811139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010455Biological Processpositive regulation of cell fate commitment
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MMGGNGEVSV PPGFRFHPTD EELLYYYLRK KVSYQHIDLD VIREVDLNKL EPWDLKEKCR  60
IGSGPQNEWY FFSHKDKKYP TGTRTNRATA AGFWKATGRD KAIHLSTSKR IGMRKTLVFY  120
TGRAPHGQKT DWIMHEYRLD DHTPDHEIQE DGWVVCRVFK KKSHTRGFNP EFDQEVEHIV  180
PFNAAGGCTL EQKQNSDHLP HYNNYTFHDH NTSNMHLPQL LSPDTVPPSF LSSLPLPTID  240
MQSSQNLLRL TSGSAATSGC GTSAGLMQPE KFSGDWSFLD KLLGATHQTM DHISKCHQFS  300
QVADFVPPTQ RIPFSYHGLE ADLSRYSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-51716614170NO APICAL MERISTEM PROTEIN
1ut4_B8e-51716614170NO APICAL MERISTEM PROTEIN
1ut7_A8e-51716614170NO APICAL MERISTEM PROTEIN
1ut7_B8e-51716614170NO APICAL MERISTEM PROTEIN
3swm_A8e-51716617173NAC domain-containing protein 19
3swm_B8e-51716617173NAC domain-containing protein 19
3swm_C8e-51716617173NAC domain-containing protein 19
3swm_D8e-51716617173NAC domain-containing protein 19
3swp_A8e-51716617173NAC domain-containing protein 19
3swp_B8e-51716617173NAC domain-containing protein 19
3swp_C8e-51716617173NAC domain-containing protein 19
3swp_D8e-51716617173NAC domain-containing protein 19
4dul_A8e-51716614170NAC domain-containing protein 19
4dul_B8e-51716614170NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159163KKKSH
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00250DAPTransfer from AT1G79580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011086315.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086315.10.0protein SOMBRERO
SwissprotQ9MA171e-114SMB_ARATH; Protein SOMBRERO
TrEMBLA0A2G9HTP41e-179A0A2G9HTP4_9LAMI; Uncharacterized protein
STRINGXP_002521498.11e-154(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.31e-102NAC family protein
Publications ? help Back to Top
  1. Fendrych M, et al.
    Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis.
    Curr. Biol., 2014. 24(9): p. 931-40
    [PMID:24726156]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  4. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]