PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011086207.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family TALE
Protein Properties Length: 358aa    MW: 39948 Da    PI: 6.57
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011086207.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-092863202155
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     k +yps++++  LA+++gL+++q+ +WF N+R ++
  XP_011086207.1 286 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 320
                     569*****************************885 PP
2ELK41.13.6e-14240261122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK qLlrKYsgyLgsLkqEF+
  XP_011086207.1 240 ELKGQLLRKYSGYLGSLKQEFM 261
                     9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.0E-18104148IPR005540KNOX1
PfamPF037901.1E-19107144IPR005540KNOX1
SMARTSM012563.6E-25153204IPR005541KNOX2
PfamPF037917.8E-21156202IPR005541KNOX2
SMARTSM011882.8E-8240261IPR005539ELK domain
PROSITE profilePS5121311.174240260IPR005539ELK domain
PfamPF037895.9E-11240261IPR005539ELK domain
PROSITE profilePS5007112.989260323IPR001356Homeobox domain
SMARTSM003891.0E-12262327IPR001356Homeobox domain
SuperFamilySSF466892.82E-19262336IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-28265324IPR009057Homeodomain-like
CDDcd000861.61E-12272324No hitNo description
PfamPF059206.4E-17280319IPR008422Homeobox KN domain
PROSITE patternPS000270298321IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009934Biological Processregulation of meristem structural organization
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MEGTGVGSSS NSCLMAFGEN NNNGFCPIIM MPPMASSHPN PDTANTLFLP LPLPTTTHQN  60
LNRDSAGGGS SMMLEQHHDN HSNNNTSTGY YFMESSNDAA GSRSSAKAKI MAHPHYHRLL  120
AAYANCQKIG APPEVVAKLE EACASAAAMG RHGTSSVGED PALDQFMEAY CEMLAKYEQE  180
LSKPFKEAML FLSRIECQFK ALSLSSSGSA CVDAMERNGS SEEEMDVNNS FIDPQAEDRE  240
LKGQLLRKYS GYLGSLKQEF MKKRKKGKLP KEARQQLLDW WSRHYKWPYP SESQKLALAE  300
STGLDQKQIN NWFINQRKRH WKPSDDMQFV VMDATHPHYY MDNVLGNPFP MDISPALL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255264LKQEFMKKRK
2261265KKRKK
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011086207.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086207.10.0homeobox protein SBH1
SwissprotP466081e-155HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA0A4D8Z0N20.0A0A4D8Z0N2_SALSN; Uncharacterized protein
STRINGXP_002518420.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68352433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-133KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]