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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011086174.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 726aa MW: 79674.2 Da PI: 5.8689 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.7 | 2.3e-19 | 59 | 114 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ ++t++q++e+e++F+++++p+ ++r+eL ++lgL+ qVk+WFqN+R+++k XP_011086174.1 59 KKRYNRHTQHQIQEMESFFKECPHPDDKQRKELGRRLGLEPLQVKFWFQNKRTQMK 114 577789***********************************************998 PP | |||||||
2 | START | 223 | 9.6e-70 | 247 | 467 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 ela +a++el+++a+++ep+W s e + ++e++++f+++ + ++ea+r+s+vv+m++ +lve+l+d++ qW+ + +a+tl XP_011086174.1 247 ELAVAAMEELIRMAQSGEPLWIPSTdnsaETLSEEEYVRTFPRGIGpkplgMKSEASRESAVVIMNHINLVEILMDVN-QWSSVFSsivsRAMTL 340 57899******************999999999***********999********************************.**************** PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170 ev+s+g galq+m+ae+q++splvp R+ +fvRy++q+g+g+w++vdvS+d+ ++ + + R++++pSg+li++++ng+skvtwvehv XP_011086174.1 341 EVLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHGDGTWAVVDVSLDNLRPSS----ISRCRRRPSGCLIQELPNGYSKVTWVEHV 431 ***********************************************************965....8**************************** PP E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++++r +h+++++lv+sgla+ga++wvatl+rqce+ XP_011086174.1 432 EVDDRAVHSIYKPLVNSGLAFGARRWVATLDRQCER 467 **********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-22 | 40 | 114 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.0E-18 | 41 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.665 | 56 | 116 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.5E-18 | 57 | 120 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.57E-18 | 58 | 117 | No hit | No description |
Pfam | PF00046 | 4.6E-17 | 59 | 114 | IPR001356 | Homeobox domain |
SuperFamily | SSF55961 | 4.58E-40 | 238 | 469 | No hit | No description |
PROSITE profile | PS50848 | 47.489 | 238 | 470 | IPR002913 | START domain |
CDD | cd08875 | 8.62E-133 | 242 | 466 | No hit | No description |
SMART | SM00234 | 3.3E-68 | 247 | 467 | IPR002913 | START domain |
Pfam | PF01852 | 3.5E-58 | 248 | 467 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 5.4E-6 | 344 | 466 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 3.57E-27 | 487 | 718 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009913 | Biological Process | epidermal cell differentiation | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0090627 | Biological Process | plant epidermal cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 726 aa Download sequence Send to blast |
MFQPNIFESH HHLLDMAHKT PENEMDLIRD DEYESKSGTD IMEAPSGDDQ DPNQRPNKKK 60 RYNRHTQHQI QEMESFFKEC PHPDDKQRKE LGRRLGLEPL QVKFWFQNKR TQMKAQHERH 120 ENTQLRNENE KLRAENIRYK EALSNATCPN CGGPAAIGEM SFDEQHLRIE NARLREEIDR 180 ISGIAAKYVG KPMLSYPHLP PGASRSLDLG VGNFAPQAGM TGEIYGAADL LRSVSGPTDA 240 DKPMIIELAV AAMEELIRMA QSGEPLWIPS TDNSAETLSE EEYVRTFPRG IGPKPLGMKS 300 EASRESAVVI MNHINLVEIL MDVNQWSSVF SSIVSRAMTL EVLSTGVAGN YNGALQVMTA 360 EFQVPSPLVP TRENYFVRYC KQHGDGTWAV VDVSLDNLRP SSISRCRRRP SGCLIQELPN 420 GYSKVTWVEH VEVDDRAVHS IYKPLVNSGL AFGARRWVAT LDRQCERLAS VLANNISAGD 480 VGVISSPEGR KSMLKLAERM VMSFCTGVGA STAHTWTTLS GSGADDVRVM TRKSMDDPGR 540 PPGIVLSAAT SFWLPVPPKR VFDFLRDENS RSEWDILSNG GLVQEMAHIA NGRDPGNSVS 600 LLRVNSANSS QSNMLILQES CTDSTGSYVI YAPVDIVAMN VVLSGGDPDY VALLPSGFAI 660 LPDGPNNQSG GIPEVGSGGS LLTVAFQILV DSVPTAKLSL GSVATVNSLI KCTVERIKGA 720 VLCDGA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011086174.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011096101.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1 | ||||
Refseq | XP_011096102.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1 | ||||
Refseq | XP_011096103.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1 | ||||
Refseq | XP_020554106.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1 | ||||
Refseq | XP_020554107.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1 | ||||
Swissprot | Q8RWU4 | 0.0 | ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1 | ||||
TrEMBL | A0A2G9GCJ2 | 0.0 | A0A2G9GCJ2_9LAMI; Uncharacterized protein | ||||
STRING | Migut.M01293.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA932 | 24 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21750.2 | 0.0 | HD-ZIP family protein |