PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011086065.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 165aa MW: 18645.3 Da PI: 6.9692 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.5 | 0.00058 | 18 | 53 | 20 | 55 |
HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 20 feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++eL +llP++++++ l ++L + v+YIk+Lq XP_011086065.1 18 LSELSSLLPHQPQEGVVSLLPEQVLAESVDYIKKLQ 53 789*******767888888889*************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-5 | 20 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 165 aa Download sequence Send to blast |
MDRNLSSSKH TTKKMKELSE LSSLLPHQPQ EGVVSLLPEQ VLAESVDYIK KLQEKLEKLK 60 HKKSCLMRMS ENSATDHLKT LNISISVSGS ALDVVLRTGL DYQFMYARVI RMLHEEGAEV 120 VNASFSVVDD TIFHNIHSEV NGEHGLERVA ARISERLRKF VSDVD |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_011086065.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011086065.1 | 1e-117 | uncharacterized protein LOC105167900 | ||||
TrEMBL | A5C0F4 | 3e-43 | A5C0F4_VITVI; Uncharacterized protein | ||||
STRING | XP_008225174.1 | 2e-42 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5105 | 21 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G20970.1 | 4e-15 | bHLH family protein |