PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011086035.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family NAC
Protein Properties Length: 307aa    MW: 34125.6 Da    PI: 9.7044
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011086035.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.67.3e-34541941128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..... 79 
                     lp+G++F+P+d+e++ e+L++kv +++      +   +    +i+   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++     
  XP_011086035.1  54 LPAGVKFDPSDQEIL-EHLEAKVLSDTrklhplV---DefipTIEGEdGICYTHPEKLP-GVSKDGQVRHFFHRPSKAYTTGTRKRRKVHsdang 143
                     799***********9.99****999996665442...133334666646**********.566677888******************85545554 PP

             NAM  80 .sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                      + +W++tgk+++v +  g+ +g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  XP_011086035.1 144 gETRWHKTGKTRPVSA-AGRIKGHKKILVLYtnYGRQKKPEKTNWVMHQYHL 194
                     4678***********9.999***********6658***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-3841213IPR003441NAC domain
PROSITE profilePS5100534.82854213IPR003441NAC domain
PfamPF023654.2E-1555194IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MIMIETALQI VSANNNVVSS RTDQQLRAIV CPSCGHTIKH HQDHQSGVQD LPGLPAGVKF  60
DPSDQEILEH LEAKVLSDTR KLHPLVDEFI PTIEGEDGIC YTHPEKLPGV SKDGQVRHFF  120
HRPSKAYTTG TRKRRKVHSD ANGGETRWHK TGKTRPVSAA GRIKGHKKIL VLYTNYGRQK  180
KPEKTNWVMH QYHLGDNEEE KDGELVLSKV FYQTQPRQCS SSSMKGSLVI STTTARSRSH  240
LSDQNPLMKN PSLAEYYGPP PPPFISYTTV GSQNINRDSP PPMIPNLVVQ DDASSLIRLP  300
SGGSKGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-115419415140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00165DAPTransfer from AT1G28470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011086035.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0646452e-56KJ064645.1 Sesamum indicum clone TilSSR_35846 microsatellite Sesame_35846 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086035.10.0NAC domain-containing protein 10
RefseqXP_020551495.10.0NAC domain-containing protein 10
SwissprotF4HY611e-116NAC10_ARATH; NAC domain-containing protein 10
TrEMBLA0A2G9GL671e-159A0A2G9GL67_9LAMI; Uncharacterized protein
STRINGEOY281521e-143(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28752454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28470.11e-119NAC domain containing protein 10