PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_011086022.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

WOX

Protein Properties

Length: 391aa MW: 42430.2 Da PI: 7.3757

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011086022.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.7	1.7e-17	59	119	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++ +eq+++Le+ F++ +p ++e++++ ++l ++ +++V++WFqNr+ + k+ XP_011086022.1 59 KPRWNPRPEQIRILEAIFNSgMVNPPRDEIRKIRAQLqeygQVGDANVFYWFQNRKSRSKH 119 89***************99***********************************995 PP
2	Wus_type_Homeobox	111.7	3.8e-36	58	121	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++kq XP_011086022.1 58 PKPRWNPRPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKQ 121 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.365	55	120	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.55E-12	56	124	IPR009057	Homeodomain-like
SMART	SM00389	9.5E-9	57	124	IPR001356	Homeobox domain
CDD	cd00086	9.30E-9	58	121	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.8E-7	58	127	IPR009057	Homeodomain-like
Pfam	PF00046	4.0E-15	59	119	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MGSSNRHWPS MFKSKPSNST THHQWQHDLN NSSSHISTGS QRNPYTPVGG CEERTPEPKP 60 RWNPRPEQIR ILEAIFNSGM VNPPRDEIRK IRAQLQEYGQ VGDANVFYWF QNRKSRSKHK 120 QRQLQNNKSQ QPPHTTSAPP ITTSVSAAAL VAPPTSSSSS SDKSSPNSSN GKPFSMGSST 180 AVVQDLLNSP TASVNQHFFQ ASSDFLTEPF FFPVQQNSGG STSSAAALTH CFPDVSCVAD 240 HSVGSISLGE LMLMSQGPSK KSEDDKMKLQ QQISCAVTDT PISAGPNIFP PSLYVSSPTN 300 HVLQAGASSG LVESGPPKST VFINDVCFEV AVGPFNVKEA FGDDAVLIQS SGQPVLTNEW 360 GVTLQPLQHG AFYYLVRAFT PSPDDRTIDL I

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MGSSNRHWPS MFKSKPSNST THHQWQHDLN NSSSHISTGS QRNPYTPVGG CEERTPEPKP  60
RWNPRPEQIR ILEAIFNSGM VNPPRDEIRK IRAQLQEYGQ VGDANVFYWF QNRKSRSKHK  120
QRQLQNNKSQ QPPHTTSAPP ITTSVSAAAL VAPPTSSSSS SDKSSPNSSN GKPFSMGSST  180
AVVQDLLNSP TASVNQHFFQ ASSDFLTEPF FFPVQQNSGG STSSAAALTH CFPDVSCVAD  240
HSVGSISLGE LMLMSQGPSK KSEDDKMKLQ QQISCAVTDT PISAGPNIFP PSLYVSSPTN  300
HVLQAGASSG LVESGPPKST VFINDVCFEV AVGPFNVKEA FGDDAVLIQS SGQPVLTNEW  360
GVTLQPLQHG AFYYLVRAFT PSPDDRTIDL I

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011086022.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011086022.1	0.0	WUSCHEL-related homeobox 8-like isoform X1
TrEMBL	A0A2G9G328	1e-164	A0A2G9G328_9LAMI; Uncharacterized protein
TrEMBL	A0A2G9HDL7	1e-164	A0A2G9HDL7_9LAMI; Uncharacterized protein
STRING	EOY28117	1e-138	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5942	23	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	9e-59	homeobox-3