 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_011085960.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
||||||||
| Family | NF-YC | ||||||||
| Protein Properties | Length: 276aa MW: 30299.5 Da PI: 5.1666 | ||||||||
| Description | NF-YC family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YC | 59.5 | 7.2e-19 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ ++ +v + ++fdfl ++v +
XP_011085960.1 6 DTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITVQRGAKTVSSVHLKHCVHSYNVFDFLKEVVSK 86
5789************************************************************************99976 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.20.10 | 2.8E-26 | 3 | 72 | IPR009072 | Histone-fold |
| SuperFamily | SSF47113 | 1.29E-20 | 4 | 88 | IPR009072 | Histone-fold |
| Pfam | PF00808 | 1.5E-19 | 8 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046982 | Molecular Function | protein heterodimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 276 aa Download sequence Send to blast |
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPVLVSKALE LFLQDLCDRT YDITVQRGAK 60 TVSSVHLKHC VHSYNVFDFL KEVVSKVPDY GHSETAADVK RRKVIANEPN DSDEESKRNI 120 MQETCHASGS GRGRGRGRGR GRGRASRATE REFPRHEVES GSTSIQQSVE QVPSPGKPMD 180 SSSELKESSK DNKVNDGVSS DSRNFDLNAG VDEENSEKMA SNAVAAAAST ASGPPEVKGD 240 EYPGLSEMDR MAIDPVHLAQ LSSRLDEDEE DYDEEG |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1jfi_A | 1e-22 | 2 | 71 | 5 | 74 | Transcription Regulator NC2 alpha chain |
| Search in ModeBase | ||||||
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 133 | 143 | RGRGRGRGRGR |
| 2 | 135 | 144 | RGRGRGRGRA |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | XP_011085960.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020550081.1 | 0.0 | dr1-associated corepressor | ||||
| TrEMBL | A0A2G9H960 | 1e-130 | A0A2G9H960_9LAMI; Class 2 transcription repressor NC2, alpha subunit (DRAP1) | ||||
| STRING | Migut.N01867.1.p | 1e-116 | (Erythranthe guttata) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA7960 | 22 | 30 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G12480.1 | 3e-65 | nuclear factor Y, subunit C11 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|