PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011085914.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 591aa    MW: 67281 Da    PI: 4.9378
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011085914.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.3e-13331374755
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +Er+RR+++N+++  Lr l+Pk +      Kl+ a+iL  A++Y+k+Lq
  XP_011085914.1 331 VAERKRRKKLNDRLYSLRALVPKiS------KLDRASILGDAIDYVKELQ 374
                     68*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-178154IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.936324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.25E-13326378No hitNo description
SuperFamilySSF474599.03E-17327387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-16330379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-16331387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-10331374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MLVQSFIERL RPLIGIKSWD YIVLWKLSND QRCIEWIDCC CAGTENVENC RDELCFPATS  60
CLPCRDVMFP HPRITPCDLL DQLPSSIVLD SGVHAQTLLS NQANWLNYTH NSDSSLSEET  120
IGTRVLVPLS LGLLELFVTK QVPEDQQVIE FIRAQYNFFL EQQTMSNSGT TANSFSSDPN  180
AQKDPLSLFQ QQIFPDPLKQ NLDLPHDISI DRIHLCTSPL HPLEQFSNAS EMGHAANNGI  240
FLEGTTYESS LFTPSIENGF QEVETMQSNM MSNSARATSW MEPSGTVEDQ MNDDPFICEN  300
NRSDDSDPND DEDDAKYRRR TGKGPQSKNL VAERKRRKKL NDRLYSLRAL VPKISKLDRA  360
SILGDAIDYV KELQKQVEDL QIELEEHSDD EEARNITAKD DTENSIPPTI IHQNGTKRGP  420
KREQENILNG FHKGSSGNTT VNISKQNHEL DITNEKVQQM EPQVEVFQLD GNEFFVKVFC  480
EHKSSGFVRL MEALNALGLE VTTVNATRHT CLVSSIFKVE RKNDETVQAD HVKESLLELT  540
RNPSRMWPNA AEESENGNSI DNEYRNHHNH NHHSLLQSRQ MSSHHLQRLH H
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1317338RRRTGKGPQSKNLVAERKRRKK
2332339ERKRRKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011085914.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085914.10.0transcription factor ABORTED MICROSPORES
TrEMBLA0A2G9H9750.0A0A2G9H975_9LAMI; Uncharacterized protein
STRINGVIT_01s0127g00860.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA96722227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-124bHLH family protein