PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011085763.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 95aa    MW: 10672 Da    PI: 8.7863
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011085763.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.75.7e-0525631854
                    HHHHHHHCTSCC.C...TTS-STCHH...HHHHHHHHHHHH CS
             HLH 18 safeeLrellPk.askapskKlsKae...iLekAveYIksL 54
                    +  ++L +llP+ +  ++ ++ +Ka+   +L+++++YI++L
  XP_011085763.1 25 ELVSKLHQLLPEiR--NTTRRSNKASadkVLQETCNYIRNL 63
                    55689*******88..34444777754449*********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.816763IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-62167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-62581IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MSGRRSRQSS GSCSSSRITD DQIIELVSKL HQLLPEIRNT TRRSNKASAD KVLQETCNYI  60
RNLHKEMDDL SARLSQLLST VDTDSPEAAI IRTLI
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011085763.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085763.12e-62transcription factor PRE1-like
SwissprotQ9LJX11e-37PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A1U8FK004e-46A0A1U8FK00_CAPAN; Transcription factor PRE5
TrEMBLA0A2G2XD164e-46A0A2G2XD16_CAPBA; Transcription factor PRE5
TrEMBLA0A2G3A6454e-46A0A2G3A645_CAPAN; transcription factor PRE6-like
TrEMBLA0A2G9I4F94e-46A0A2G9I4F9_9LAMI; Uncharacterized protein
STRINGSolyc02g067380.2.19e-46(Solanum lycopersicum)
STRINGPGSC0003DMT4000177481e-45(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35324161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39860.17e-35bHLH family protein