PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011085756.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 315aa    MW: 35044.9 Da    PI: 7.4462
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011085756.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.3e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  lv +v+++G+g+W+++++t g++R+ k+c++rw +yl
   XP_011085756.1 14 KGPWTPEEDIVLVSYVQEHGPGNWRAVPATTGLKRCSKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding47.73.5e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +T  E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
   XP_011085756.1  67 RGTFTDHEEKMIIQLQALLGNK-WAAIASYLP-ERTDNDIKNYWNTHL 112
                      899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.0E-24564IPR009057Homeodomain-like
PROSITE profilePS5129425.102965IPR017930Myb domain
SuperFamilySSF466897.86E-3111108IPR009057Homeodomain-like
SMARTSM007173.7E-131363IPR001005SANT/Myb domain
PfamPF002495.1E-161461IPR001005SANT/Myb domain
CDDcd001672.29E-101661No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2465117IPR009057Homeodomain-like
SMARTSM007172.0E-1566114IPR001005SANT/Myb domain
PROSITE profilePS5129419.32266116IPR017930Myb domain
PfamPF002498.6E-1467112IPR001005SANT/Myb domain
CDDcd001671.01E-1069111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MGRPPCCDKV GVKKGPWTPE EDIVLVSYVQ EHGPGNWRAV PATTGLKRCS KSCRLRWTNY  60
LRPGIKRGTF TDHEEKMIIQ LQALLGNKWA AIASYLPERT DNDIKNYWNT HLKKKLKKLQ  120
NGSEYGFSSN NSISRGQWER RVQADIKTAK QALHDALSVD NTTTHLIPSN ACSLAYRNPC  180
QASSYASSTD NIARLLKQWG KTTTPKSEHQ SKSCSSTQNS SNNTTLDSAN CTDQTQSGGV  240
YDVSHQGFES LFESSSSDDL SRSSASPCSL DILVESKPDP ADHQLSVLEN WLLGDQLGKD  300
YLTDFSFDDE NPSLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-26141164105MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-26141164105C-Myb DNA-Binding Domain
1msf_C3e-26141164105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011085756.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085756.10.0myb-related protein 306-like
SwissprotP813921e-102MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A2G9I4001e-131A0A2G9I400_9LAMI; Transcription factor, Myb superfamily
STRINGMigut.H00921.1.p1e-128(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.12e-98myb domain protein 94
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]