PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011085580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | bHLH | ||||||||
Protein Properties | Length: 317aa MW: 35568 Da PI: 4.6864 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 54.7 | 1.8e-17 | 33 | 82 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+e E+rRR++iN++f+ Lr+l+P++ ++K +Ka+ L ++++YI+ Lq XP_011085580.1 33 RSKHSETEQRRRSKINERFQILRDLIPEN----DQKRDKASFLLEVIQYIQFLQ 82 899*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.2E-22 | 30 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.498 | 31 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.46E-19 | 32 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.57E-17 | 33 | 86 | No hit | No description |
Pfam | PF00010 | 5.2E-15 | 33 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.0E-13 | 37 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MVRTVSHVED EETHDSSSPI ESKRVDQKVN ASRSKHSETE QRRRSKINER FQILRDLIPE 60 NDQKRDKASF LLEVIQYIQF LQEKLQMYEG SCQGWSPEPA KFSPWRINSG PVESYGDQSQ 120 LDRDLSGHED NVVLNPTVLS NVQNSVESDL TGSTLYRSTD NPPMTMKALP LNMPPQAPVF 180 ESMPPQSHPG SFPDAEQLTQ QSRSHFWPGR SCGNDCSVPI YAANEEELKS ENGEASISNS 240 YSQGLLNSLT NALQSSGVDL SQTSISVQLD IGKRTNGRNT NTTFNFKDPD DASGLDYGAP 300 LNDIENYEHP QKRFRAD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011085580.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011085580.1 | 0.0 | transcription factor BIM2 isoform X2 | ||||
TrEMBL | A0A2G9HJ80 | 1e-162 | A0A2G9HJ80_9LAMI; Uncharacterized protein | ||||
STRING | Migut.H00581.1.p | 1e-127 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 3e-52 | BES1-interacting Myc-like protein 2 |